Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GLYCAM1-201ENST00000546596 285 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 DNAJC8P1-201ENST00000554535 372 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC087481.2-201ENST00000565492 330 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 MIR4666A-201ENST00000580160 79 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 MIR5194-201ENST00000582634 120 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AL109653.1-201ENST00000603091 248 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AP005229.2-201ENST00000609980 697 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 MIR6076-201ENST00000617521 113 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC073968.1-201ENST00000618594 637 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC018755.4-201ENST00000619715 454 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AP000943.4-201ENST00000622912 357 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 SGO1P2-201ENST00000429458 1589 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 GDI2P1-201ENST00000429312 1336 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 Y_RNA.68-201ENST00000362881 102 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 Y_RNA.393-201ENST00000383936 102 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 U6.112-201ENST00000384129 70 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 RPL23AP29-201ENST00000397284 453 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 RPL7P30-201ENST00000420888 709 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 RPL31P54-201ENST00000429803 370 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AL512637.2-201ENST00000431287 1256 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 NAP1L1P3-201ENST00000462291 880 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 RNU6-202P-201ENST00000515998 96 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 RNA5SP135-201ENST00000517019 125 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 MTATP6P3-201ENST00000581686 676 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 SNORD39.3-201ENST00000584451 71 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 SEPT7P9-203ENST00000604116 343 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 AP003122.6-201ENST00000623831 495 ntBASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
SHANK3Q9BYB0 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 RNU1-22P-201ENST00000363334 158 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AL591034.1-201ENST00000407447 340 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 RNA5SP489-201ENST00000410986 109 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AC092634.2-201ENST00000428146 1010 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 GXYLT1P1-201ENST00000446657 490 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 DPPA3P1-201ENST00000448050 469 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 RNU1-92P-201ENST00000517017 135 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 RNU6-711P-201ENST00000517255 106 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 SNORD53B-201ENST00000577887 78 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AC025588.3-201ENST00000604182 274 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AC083806.3-201ENST00000614016 455 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 AC111188.2-201ENST00000529697 1387 ntBASIC2.01□□□□□ -2.09
SHANK3Q9BYB0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SHANK3Q9BYB0 RNU6-374P-201ENST00000364146 108 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 Y_RNA.251-201ENST00000364551 99 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 RNU6-354P-201ENST00000383862 107 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 RNU6-610P-201ENST00000384264 107 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 ANAPC10P1-201ENST00000395991 556 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 TAF13P2-201ENST00000416876 286 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL035410.1-201ENST00000427409 427 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC005534.2-201ENST00000431047 433 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 MTCYBP15-201ENST00000433123 1127 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 NDUFA5P7-201ENST00000452914 242 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 MRPL42P4-201ENST00000453267 443 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC022690.1-201ENST00000526681 550 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL121821.2-201ENST00000556081 394 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 MIR3618-201ENST00000580330 88 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 BNIP3P24-201ENST00000593398 557 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL360181.4-201ENST00000621752 134 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 OR1L1-202ENST00000373686 1083 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 MIR520E-201ENST00000384867 87 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 RPS15AP38-201ENST00000413110 372 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 UBE2D3P3-201ENST00000426992 425 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 EZH2P1-201ENST00000431167 291 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL365400.1-201ENST00000431854 640 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 179 ms