Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL596245.1-201ENST00000618994 362 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC012442.3-202ENST00000636742 206 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC107081.3-201ENST00000612715 2034 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL445437.1-201ENST00000623157 3087 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU4-50P-201ENST00000364361 141 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.539-201ENST00000384635 107 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL21P24-201ENST00000413752 448 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL30P2-201ENST00000414021 291 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MYL8P-204ENST00000431574 518 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 NOTCH2P1-201ENST00000443481 624 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU7-59P-201ENST00000459101 61 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 UBE2DNL-203ENST00000474922 222 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC105758.1-201ENST00000506038 399 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC096745.1-201ENST00000509945 370 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU4-71P-201ENST00000516258 113 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP003733.2-201ENST00000529409 171 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC026371.1-201ENST00000551867 419 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MIR6891-201ENST00000618788 93 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC009313.2-201ENST00000417893 1941 ntBASIC5.89□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MIR331-201ENST00000362302 94 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.399-201ENST00000383955 105 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MIR34B-201ENST00000385076 84 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL23AP26-201ENST00000412728 464 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC108032.1-201ENST00000416706 207 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC016696.1-201ENST00000446949 318 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 NDUFB1P2-201ENST00000449477 176 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RN7SL429P-201ENST00000479090 223 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RN7SL489P-201ENST00000486185 223 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RN7SL327P-201ENST00000488659 223 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL132838.2-201ENST00000492041 314 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP003730.1-201ENST00000524605 285 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SNORA51-201ENST00000606420 132 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC107294.1-201ENST00000609524 467 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RN7SL853P-201ENST00000617250 223 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MAPK10-303ENST00000641324 3959 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC092435.4-201ENST00000623012 4159 ntBASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU1-20P-201ENST00000363314 162 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RN7SKP186-201ENST00000365371 303 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC114491.1-201ENST00000416095 246 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC097713.2-201ENST00000430199 356 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL117339.2-201ENST00000430475 180 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL445584.1-201ENST00000431451 330 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 PPIAP13-201ENST00000434706 478 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPS29P7-201ENST00000439662 171 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RN7SKP46-201ENST00000515942 234 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6-323P-201ENST00000521915 107 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 FAM60DP-201ENST00000524174 632 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RANP3-201ENST00000530970 276 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC010620.2-201ENST00000600135 313 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC134882.1-201ENST00000603738 1676 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF33CP-201ENST00000432492 2030 ntBASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms