Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNA5SP258-201ENST00000362750 119 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.64-201ENST00000362845 102 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SNORD27-201ENST00000363981 72 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.526-201ENST00000384572 110 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.576-201ENST00000384781 102 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR19A-201ENST00000384878 82 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-293P-201ENST00000411259 106 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-387P-201ENST00000411331 105 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL451074.5-201ENST00000415894 435 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL590632.1-201ENST00000424289 371 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPS15AP27-201ENST00000449183 343 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL138752.1-201ENST00000452964 351 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC116533.1-201ENST00000459748 321 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPL21P8-201ENST00000465083 535 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC007991.1-201ENST00000522680 631 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC091516.1-201ENST00000549191 703 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC068446.3-201ENST00000555285 382 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RN7SL176P-201ENST00000580352 264 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR4286-201ENST00000580651 93 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR5692C1-201ENST00000585309 91 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 HMGB1P50-201ENST00000605814 607 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 HMGN2P28-201ENST00000606102 262 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 U2.17-201ENST00000611454 95 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 uc_338.9-201ENST00000617424 182 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR6852-201ENST00000621699 66 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ZNF137P-201ENST00000456718 1920 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-61P-201ENST00000365528 109 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-48P-201ENST00000384161 107 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-441P-201ENST00000384545 106 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC096664.2-201ENST00000411843 406 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AP000275.1-201ENST00000411943 390 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 HMGN1P24-201ENST00000412282 298 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 GSTM3P2-201ENST00000412746 530 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 BX682237.1-201ENST00000415016 335 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 UBE2FP1-201ENST00000416536 447 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL590233.1-201ENST00000430017 456 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL162591.2-201ENST00000449634 317 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MTCO3P8-201ENST00000453691 755 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPL9P32-201ENST00000464118 620 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TRBVB-201ENST00000477100 408 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC020893.1-201ENST00000502452 580 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CYCSP28-201ENST00000534284 321 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CYP3A51P-201ENST00000633513 256 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR492-201ENST00000638676 116 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RAD17P1-201ENST00000418130 2042 ntBASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC016588.2-201ENST00000632484 3021 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL138713.1-201ENST00000624026 2130 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC008079.2-201ENST00000623543 20396 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.19-201ENST00000362462 99 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SNORD62.1-201ENST00000362541 86 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-125P-201ENST00000384505 107 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL136372.1-201ENST00000403060 228 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC011933.1-201ENST00000413334 321 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TMSB10P2-201ENST00000416049 131 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CALM2P2-201ENST00000428512 440 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 USP9YP30-201ENST00000430729 455 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MRPS18BP2-201ENST00000434310 759 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC004383.1-201ENST00000438135 289 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL133547.1-201ENST00000448546 220 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 DYNLL1P5-201ENST00000467158 270 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-1069P-201ENST00000516612 133 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-1332P-201ENST00000516666 104 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RN7SKP96-201ENST00000516948 297 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC090115.3-201ENST00000553218 849 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC024619.4-201ENST00000580924 316 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR5188-201ENST00000583467 113 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC091178.1-203ENST00000584586 279 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC104763.2-201ENST00000604179 382 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC005000.2-201ENST00000605468 310 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC103710.2-202ENST00000641454 2853 ntBASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms