Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC034244.1-201ENST00000507687 207 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RNU6-1102P-201ENST00000516149 96 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RNU1-40P-201ENST00000516816 164 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RNU1-97P-201ENST00000516872 164 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 MIR151B-201ENST00000584249 96 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AL157834.3-201ENST00000615543 103 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC006213.5-201ENST00000619673 288 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC002546.1-201ENST00000588041 2504 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RNU6-444P-201ENST00000383988 108 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AL136133.1-201ENST00000413694 376 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 HSPE1P1-201ENST00000421494 318 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RAB11AP1-201ENST00000442978 646 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RPL7P55-201ENST00000450522 746 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC010301.1-201ENST00000473936 355 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC108729.2-201ENST00000476543 840 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC093767.1-201ENST00000504523 156 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNA5SP82-201ENST00000516707 92 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 SYF2P1-201ENST00000550658 413 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 SNRPGP1-201ENST00000553864 222 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 MIR16-2-201ENST00000362117 81 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNU6-50P-201ENST00000362356 103 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNU6-600P-201ENST00000362524 99 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNU6-1249P-201ENST00000363237 111 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNU6-730P-201ENST00000383954 104 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RNU6-441P-201ENST00000384545 106 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 WARS2P1-201ENST00000429678 537 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 MTND4P15-201ENST00000437913 1033 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 RPS20P24-201ENST00000457473 361 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AF131216.2-201ENST00000512316 564 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AP004371.1-201ENST00000525240 214 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC079148.1-201ENST00000565944 819 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AP001029.3-201ENST00000588063 596 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 SGO1P1-201ENST00000603525 1447 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC009220.3-201ENST00000604318 586 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AL445493.3-201ENST00000619568 477 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AC097460.3-201ENST00000623099 442 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 AL512506.2-201ENST00000624472 458 ntBASIC2.14□□□□□ -2.07
SHANK3Q9BYB0 ZNF876P-202ENST00000398732 1485 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 SNORD56.5-201ENST00000364281 72 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 SSXP10-201ENST00000402595 565 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 RNU2-32P-201ENST00000411193 191 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AL606495.1-201ENST00000422100 813 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 RPP40P1-201ENST00000426762 456 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AC114973.1-201ENST00000429057 632 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AL591704.1-201ENST00000432574 275 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 HSFY3P-201ENST00000444242 1191 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AC008379.1-201ENST00000463655 464 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AC034222.1-201ENST00000494052 532 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 RNU6-416P-201ENST00000516265 103 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 MIR4448-201ENST00000584360 86 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AL021368.1-201ENST00000607490 540 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AP005137.2-201ENST00000609238 400 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 HPVC1-201ENST00000629899 1198 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 AL163152.1-201ENST00000642001 374 ntBASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
SHANK3Q9BYB0 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 AC016716.1-201ENST00000265882 708 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 SNORA16.1-201ENST00000364597 132 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 MIR16-1-201ENST00000385271 89 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 RNA5SP492-201ENST00000411330 114 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 AL445183.3-201ENST00000414168 502 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 RPL17P35-201ENST00000432217 549 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 AC121161.1-201ENST00000510606 652 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 AC013444.2-201ENST00000603317 787 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 AC098679.5-201ENST00000624394 571 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 RBBP8P1-201ENST00000449447 1844 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 DBF4P1-201ENST00000412976 1892 ntBASIC2.12□□□□□ -2.07
SHANK3Q9BYB0 RNU6-174P-201ENST00000410406 106 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 164.5 ms