Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RPL17P12-201ENST00000413391 526 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 MTND2P30-201ENST00000456663 382 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 AC139103.1-201ENST00000534696 1030 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 AC016542.1-201ENST00000608259 493 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 AC020923.1-201ENST00000624021 917 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 AC091948.2-201ENST00000636510 279 ntBASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SHANK3Q9BYB0 RNU6-335P-201ENST00000364563 113 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 RNU1-93P-201ENST00000364704 169 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 SRIP3-201ENST00000413200 219 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 MTND1P23-201ENST00000416931 372 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AL691517.1-201ENST00000440833 1235 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 MTCO3P43-201ENST00000440974 771 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 RNFT1P2-201ENST00000443064 757 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC009474.2-201ENST00000451383 136 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 RPS27P23-201ENST00000487608 251 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC016065.2-201ENST00000514530 444 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 RNA5SP476-201ENST00000516613 103 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 MIR4421-201ENST00000578133 69 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 DPRXP5-201ENST00000604662 539 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC132825.7-201ENST00000638744 335 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 ZNF734P-201ENST00000419494 1534 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 Z98749.2-208ENST00000381646 500 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AL500527.1-201ENST00000448532 255 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 OR52A4P-202ENST00000481634 799 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC022634.1-201ENST00000520765 532 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 MTCO3P24-201ENST00000572729 782 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AC012254.4-201ENST00000588843 273 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 AL121917.1-203ENST00000605534 577 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 SNHG22-203ENST00000617833 660 ntBASIC2.17□□□□□ -2.06
SHANK3Q9BYB0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 RNU6-251P-201ENST00000363235 104 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AL121978.1-201ENST00000402778 359 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 RPL23AP47-201ENST00000408017 460 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 PAICSP7-201ENST00000419829 962 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 RPL21P66-201ENST00000426566 466 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 ZNF736P6Y-201ENST00000447526 1213 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 OR51B8P-201ENST00000449892 769 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AL353718.1-201ENST00000451028 517 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 HMGB1P38-201ENST00000490557 577 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC109464.2-201ENST00000510242 943 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 PRELID3BP4-201ENST00000515476 571 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 MTCYBP41-201ENST00000528913 1123 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 HSPE1P14-201ENST00000605812 302 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 AC006963.1-201ENST00000624003 1052 ntBASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.16□□□□□ -2.06
SHANK3Q9BYB0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.15□□□□□ -2.06
SHANK3Q9BYB0 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RNA5SP393-201ENST00000363423 117 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 TAS2R15P-201ENST00000390674 928 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RNU6-932P-201ENST00000391108 106 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AL158050.1-201ENST00000416077 457 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RPL21P32-201ENST00000419877 477 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC099677.1-201ENST00000420575 175 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AL929288.2-201ENST00000446368 407 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC004022.1-201ENST00000447766 1066 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RPS24P6-201ENST00000452670 400 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC069528.1-202ENST00000482888 637 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 MTCO3P35-201ENST00000485582 781 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RPL21P131-201ENST00000497298 483 ntBASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.15□□□□□ -2.07
SHANK3Q9BYB0 RPL37P25-201ENST00000507308 276 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 1120.4 ms