Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RBMY1KP-201ENST00000423480 476 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 UBE2V1P13-201ENST00000436983 439 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 H2AFZP5-201ENST00000446960 382 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC098583.1-201ENST00000480875 255 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC021146.3-201ENST00000511911 260 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 SCARNA16.2-201ENST00000516520 172 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 IGKV2D-23-201ENST00000518179 286 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 HMGN2P47-201ENST00000559378 272 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC009779.6-201ENST00000603972 165 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC004792.1-201ENST00000614523 137 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AP000843.1-201ENST00000624880 701 ntBASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC6.04□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 SNORA51.6-201ENST00000384151 125 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU6-190P-201ENST00000384154 102 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.462-201ENST00000384268 102 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.464-201ENST00000384282 110 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU6-921P-201ENST00000384361 107 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.500-201ENST00000384466 111 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 MIR218-2-201ENST00000385006 110 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 DSTNP4-201ENST00000399472 474 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RN7SKP284-201ENST00000411002 343 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL139095.3-201ENST00000419672 1203 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 CBX1P4-201ENST00000439415 457 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 NEFMP1-201ENST00000443423 1006 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 TMSB4XP3-201ENST00000445144 114 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL031584.1-201ENST00000447169 754 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC005297.2-201ENST00000450430 606 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU6-255P-201ENST00000516957 105 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC009902.3-201ENST00000606235 2172 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC097714.1-201ENST00000511272 1647 ntBASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC6.03□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 OR56B2P-202ENST00000641377 2453 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.20-201ENST00000362479 113 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC016769.3-201ENST00000396562 315 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL583834.1-201ENST00000406943 343 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPL36AP6-201ENST00000435770 321 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC011816.1-201ENST00000441346 546 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC243772.1-201ENST00000451620 410 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ISCUP1-201ENST00000454451 448 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CREM-226ENST00000469949 721 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPL21P93-201ENST00000480465 489 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR4433B-201ENST00000581329 102 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR3936-201ENST00000584304 110 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC055839.1-201ENST00000634467 498 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 DLD-204ENST00000437604 1859 ntTSL 2 BASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC073346.2-201ENST00000624724 2058 ntBASIC6.02□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 OR14L1P-202ENST00000641545 3009 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 NXPH1-205ENST00000602349 1953 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-1287P-201ENST00000362914 107 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-1159P-201ENST00000362933 107 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-97P-201ENST00000363387 104 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNORD115-7-201ENST00000365306 82 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-1060P-201ENST00000384664 107 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNA5SP219-201ENST00000390940 113 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC097374.1-203ENST00000400783 485 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL022722.2-201ENST00000402519 180 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL023807.1-201ENST00000407932 359 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR548H3-201ENST00000408771 118 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 Z99755.1-201ENST00000414048 380 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC013470.1-201ENST00000453438 462 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 snoU13.8-201ENST00000458890 104 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC146944.2-203ENST00000502493 354 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC139495.1-202ENST00000513164 354 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPS27AP18-201ENST00000515536 459 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 181.8 ms