Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 COX6CP5-201ENST00000527162 228 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 AC113368.1-201ENST00000603736 382 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 AC135178.6-201ENST00000605314 398 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 AL512598.1-201ENST00000610158 273 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 U6.107-201ENST00000637108 79 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 OR4G1P-203ENST00000641984 1631 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 MTCO1P18-201ENST00000455518 1419 ntBASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
SHANK3Q9BYB0 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AL109741.2-201ENST00000455561 343 ntBASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 RNU6-56P-201ENST00000516986 93 ntBASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AL163153.1-201ENST00000554223 283 ntBASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AC034102.8-201ENST00000615146 484 ntBASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AC017104.5-201ENST00000637647 639 ntBASIC2.34□□□□□ -2.04
SHANK3Q9BYB0 AL157700.1-201ENST00000561973 1432 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 DDX10P1-201ENST00000448545 1933 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 OR5T3-201ENST00000303059 1023 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 RNU6-53P-201ENST00000365367 106 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 NUP35P2-201ENST00000416748 943 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AC104108.1-201ENST00000509930 412 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AC124283.4-201ENST00000581815 456 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 RPL23AP78-201ENST00000599928 470 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 OR4H6P-202ENST00000603819 340 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AL049779.4-201ENST00000604500 156 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AC006065.5-201ENST00000623427 349 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AC090617.7-201ENST00000623952 126 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AP003400.6-201ENST00000624698 740 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 AL109659.3-201ENST00000624985 950 ntBASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.33□□□□□ -2.04
SHANK3Q9BYB0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 DEFB109C-201ENST00000382575 264 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 DEFB109B-201ENST00000382656 264 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 PSMA2P3-201ENST00000429685 675 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AC107393.1-201ENST00000512403 346 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 RNU6-362P-201ENST00000516736 90 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 MTND2P26-201ENST00000528255 1029 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AC016957.1-201ENST00000534895 309 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AP003717.3-201ENST00000544832 1180 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AC040174.2-201ENST00000602701 465 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 AC092954.1-201ENST00000609121 445 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 MIR8081-201ENST00000611533 95 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 PABPC1P7-201ENST00000413177 1513 ntBASIC2.32□□□□□ -2.04
SHANK3Q9BYB0 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 RNU6-1339P-201ENST00000363574 91 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 MIR525-201ENST00000384978 85 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 PRRC2CP1-201ENST00000404428 159 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC244098.2-201ENST00000422068 99 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 MORF4L1P7-201ENST00000426038 703 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC006548.1-201ENST00000427470 102 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AL513343.1-201ENST00000451818 792 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 MTND2P6-201ENST00000455337 1030 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC025033.1-201ENST00000463883 194 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 RNF138P1-201ENST00000502765 546 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC008526.1-201ENST00000509149 338 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AP005660.1-201ENST00000522972 293 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AP001804.3-201ENST00000525146 880 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC124293.1-201ENST00000530034 493 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC113194.1-201ENST00000606037 500 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC024560.3-201ENST00000608482 349 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 CR381572.1-201ENST00000625098 102 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AL121594.5-201ENST00000631724 573 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC121333.1-201ENST00000567488 2709 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms