Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col7a1Q63870 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col7a1Q63870 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col7a1Q63870 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col7a1Q63870 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col7a1Q63870 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col7a1Q63870 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Col7a1Q63870 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.41■□□□□ 0.86
Col7a1Q63870 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col7a1Q63870 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col7a1Q63870 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Col7a1Q63870 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col7a1Q63870 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.4■□□□□ 0.86
Col7a1Q63870 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Col7a1Q63870 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col7a1Q63870 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col7a1Q63870 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
Col7a1Q63870 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.38■□□□□ 0.85
Col7a1Q63870 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.38■□□□□ 0.85
Col7a1Q63870 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col7a1Q63870 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col7a1Q63870 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col7a1Q63870 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col7a1Q63870 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col7a1Q63870 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col7a1Q63870 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col7a1Q63870 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col7a1Q63870 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col7a1Q63870 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col7a1Q63870 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Col7a1Q63870 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col7a1Q63870 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col7a1Q63870 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.33■□□□□ 0.85
Col7a1Q63870 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.33■□□□□ 0.84
Col7a1Q63870 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col7a1Q63870 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col7a1Q63870 Gm13238-201ENSMUST00000117655 780 ntBASIC20.32■□□□□ 0.84
Col7a1Q63870 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col7a1Q63870 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col7a1Q63870 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col7a1Q63870 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Col7a1Q63870 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.3■□□□□ 0.84
Col7a1Q63870 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.3■□□□□ 0.84
Col7a1Q63870 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col7a1Q63870 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col7a1Q63870 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col7a1Q63870 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Col7a1Q63870 Gm9959-201ENSMUST00000068277 390 ntBASIC20.29■□□□□ 0.84
Col7a1Q63870 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col7a1Q63870 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col7a1Q63870 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.28■□□□□ 0.84
Col7a1Q63870 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col7a1Q63870 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col7a1Q63870 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col7a1Q63870 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col7a1Q63870 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col7a1Q63870 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col7a1Q63870 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Col7a1Q63870 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.25■□□□□ 0.83
Col7a1Q63870 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col7a1Q63870 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col7a1Q63870 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.24■□□□□ 0.83
Col7a1Q63870 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.24■□□□□ 0.83
Col7a1Q63870 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col7a1Q63870 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col7a1Q63870 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col7a1Q63870 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col7a1Q63870 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.23■□□□□ 0.83
Col7a1Q63870 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col7a1Q63870 Gm43566-201ENSMUST00000196851 808 ntBASIC20.22■□□□□ 0.83
Col7a1Q63870 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col7a1Q63870 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col7a1Q63870 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col7a1Q63870 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.21■□□□□ 0.83
Col7a1Q63870 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
Col7a1Q63870 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col7a1Q63870 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col7a1Q63870 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Col7a1Q63870 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col7a1Q63870 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col7a1Q63870 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.2■□□□□ 0.82
Col7a1Q63870 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col7a1Q63870 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.2■□□□□ 0.82
Col7a1Q63870 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col7a1Q63870 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.2■□□□□ 0.82
Col7a1Q63870 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.2■□□□□ 0.82
Col7a1Q63870 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col7a1Q63870 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col7a1Q63870 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col7a1Q63870 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col7a1Q63870 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col7a1Q63870 Gm45444-201ENSMUST00000211394 898 ntBASIC20.18■□□□□ 0.82
Col7a1Q63870 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col7a1Q63870 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col7a1Q63870 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.17■□□□□ 0.82
Col7a1Q63870 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.17■□□□□ 0.82
Col7a1Q63870 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col7a1Q63870 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Col7a1Q63870 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col7a1Q63870 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms