Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn2aA0A0J9YTW6 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Scn2aA0A0J9YTW6 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn2aA0A0J9YTW6 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.43■■□□□ 1.02
Scn2aA0A0J9YTW6 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn2aA0A0J9YTW6 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn2aA0A0J9YTW6 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn2aA0A0J9YTW6 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Scn2aA0A0J9YTW6 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.41■■□□□ 1.02
Scn2aA0A0J9YTW6 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.41■■□□□ 1.02
Scn2aA0A0J9YTW6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
Scn2aA0A0J9YTW6 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
Scn2aA0A0J9YTW6 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Scn2aA0A0J9YTW6 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn2aA0A0J9YTW6 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Gm45364-201ENSMUST00000210883 159 ntBASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Scn2aA0A0J9YTW6 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Scn2aA0A0J9YTW6 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.37■■□□□ 1.01
Scn2aA0A0J9YTW6 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Scn2aA0A0J9YTW6 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scn2aA0A0J9YTW6 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn2aA0A0J9YTW6 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.35■■□□□ 1.01
Scn2aA0A0J9YTW6 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn2aA0A0J9YTW6 Gm6311-201ENSMUST00000073790 878 ntBASIC21.35■■□□□ 1.01
Scn2aA0A0J9YTW6 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Scn2aA0A0J9YTW6 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn2aA0A0J9YTW6 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.33■■□□□ 1
Scn2aA0A0J9YTW6 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.33■■□□□ 1
Scn2aA0A0J9YTW6 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn2aA0A0J9YTW6 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Scn2aA0A0J9YTW6 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.31■■□□□ 1
Scn2aA0A0J9YTW6 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.31■■□□□ 1
Scn2aA0A0J9YTW6 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Scn2aA0A0J9YTW6 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.3■■□□□ 1
Scn2aA0A0J9YTW6 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn2aA0A0J9YTW6 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.3■■□□□ 1
Scn2aA0A0J9YTW6 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn2aA0A0J9YTW6 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn2aA0A0J9YTW6 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn2aA0A0J9YTW6 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Scn2aA0A0J9YTW6 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn2aA0A0J9YTW6 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn2aA0A0J9YTW6 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Scn2aA0A0J9YTW6 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Scn2aA0A0J9YTW6 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.28■■□□□ 1
Scn2aA0A0J9YTW6 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC21.28■■□□□ 1
Scn2aA0A0J9YTW6 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.28■■□□□ 1
Scn2aA0A0J9YTW6 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Scn2aA0A0J9YTW6 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Scn2aA0A0J9YTW6 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn2aA0A0J9YTW6 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.27■■□□□ 1
Scn2aA0A0J9YTW6 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.27■■□□□ 1
Scn2aA0A0J9YTW6 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.27■■□□□ 1
Scn2aA0A0J9YTW6 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Scn2aA0A0J9YTW6 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
Scn2aA0A0J9YTW6 Gm11175-201ENSMUST00000116172 543 ntBASIC21.26■□□□□ 0.99
Scn2aA0A0J9YTW6 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn2aA0A0J9YTW6 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn2aA0A0J9YTW6 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.26■□□□□ 0.99
Scn2aA0A0J9YTW6 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.25■□□□□ 0.99
Scn2aA0A0J9YTW6 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn2aA0A0J9YTW6 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.25■□□□□ 0.99
Scn2aA0A0J9YTW6 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn2aA0A0J9YTW6 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Scn2aA0A0J9YTW6 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Scn2aA0A0J9YTW6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn2aA0A0J9YTW6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn2aA0A0J9YTW6 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Scn2aA0A0J9YTW6 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Scn2aA0A0J9YTW6 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn2aA0A0J9YTW6 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.22■□□□□ 0.99
Scn2aA0A0J9YTW6 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn2aA0A0J9YTW6 Mir3960-201ENSMUST00000198213 73 ntBASIC21.2■□□□□ 0.98
Scn2aA0A0J9YTW6 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Scn2aA0A0J9YTW6 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn2aA0A0J9YTW6 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn2aA0A0J9YTW6 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn2aA0A0J9YTW6 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Scn2aA0A0J9YTW6 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.19■□□□□ 0.98
Scn2aA0A0J9YTW6 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn2aA0A0J9YTW6 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn2aA0A0J9YTW6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.18■□□□□ 0.98
Scn2aA0A0J9YTW6 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Scn2aA0A0J9YTW6 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn2aA0A0J9YTW6 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn2aA0A0J9YTW6 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Scn2aA0A0J9YTW6 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Scn2aA0A0J9YTW6 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms