Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC104820.1-201ENST00000624183 307 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 FAM157B-203ENST00000639350 358 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 MIR1294-201ENST00000408503 142 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 RPS7P9-201ENST00000414704 586 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC009237.8-201ENST00000445492 379 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 PPP1R2P5-201ENST00000457256 603 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC021146.8-201ENST00000507455 733 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 RNA5SP102-201ENST00000516865 106 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 HMGN2P28-201ENST00000606102 262 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 MIR6864-201ENST00000617935 70 ntBASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.45□□□□□ -2.02
SHANK3Q9BYB0 AC110774.1-201ENST00000623567 2018 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 RNU6-342P-201ENST00000384521 104 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 BX322784.1-201ENST00000455793 1077 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 SNORA31.13-201ENST00000516624 135 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 RNU6-250P-201ENST00000516958 103 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AL356575.1-201ENST00000603008 283 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AL078603.1-201ENST00000603824 313 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC069304.3-201ENST00000603938 1084 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 BX322635.1-201ENST00000605804 496 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 uc_338.5-201ENST00000611839 155 ntBASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.44□□□□□ -2.02
SHANK3Q9BYB0 AC019129.1-201ENST00000403786 261 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 RNA5SP338-201ENST00000410495 85 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 CR848007.2-201ENST00000424918 787 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 AL138799.3-201ENST00000438968 350 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 HAUS1P3-201ENST00000523909 662 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 AC010678.1-201ENST00000614118 713 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 AC090617.9-201ENST00000623751 147 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.43□□□□□ -2.02
SHANK3Q9BYB0 RNA5SP295-201ENST00000362655 121 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 RNA5SP160-201ENST00000364866 120 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AGR3-202ENST00000402239 563 ntTSL 2 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AF274854.1-201ENST00000413236 615 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 PRELID3BP11-201ENST00000414230 479 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 LINC01347-201ENST00000417964 355 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC114878.1-201ENST00000441166 358 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 TPTE2P6-202ENST00000445572 1007 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC104689.1-201ENST00000473356 768 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 HMGN1P28-201ENST00000521340 364 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 LLPHP1-201ENST00000603571 367 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC012467.1-201ENST00000607740 256 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL353748.2-201ENST00000622148 471 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL391987.6-201ENST00000305671 199 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 Y_RNA.327-201ENST00000365201 102 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 ERHP2-201ENST00000402323 299 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 RPL7P46-201ENST00000425129 740 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 MTND2P29-201ENST00000438595 412 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC097499.1-201ENST00000444277 208 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 ARPC3P2-201ENST00000457786 533 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 RNU1-123P-201ENST00000458950 160 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC092991.1-201ENST00000477176 376 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AC121761.2-201ENST00000617300 689 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 AL118508.4-201ENST00000624142 1176 ntBASIC2.42□□□□□ -2.02
SHANK3Q9BYB0 ZNF271P-202ENST00000465539 1970 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 MIR1323-201ENST00000408090 73 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms