Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORD116.3-201ENST00000517176 78 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SNORA70.24-201ENST00000517233 118 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OR4P1P-201ENST00000530808 1136 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR3128-201ENST00000581957 66 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC005191.1-201ENST00000603950 358 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC104662.1-201ENST00000604448 511 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL354984.3-201ENST00000604803 325 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL021879.1-201ENST00000611756 288 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR7973-1-201ENST00000614683 76 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC138965.3-201ENST00000623875 498 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 U6.101-201ENST00000637707 76 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 KPNA2P2-201ENST00000419546 1489 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC116096.1-201ENST00000566804 2314 ntBASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MAPK10-349ENST00000641767 3661 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-200P-201ENST00000364743 107 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-746P-201ENST00000384112 109 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.461-201ENST00000384263 103 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-472P-201ENST00000384299 107 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR659-201ENST00000384963 97 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR200C-201ENST00000384980 68 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-823P-201ENST00000391042 103 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL136131.1-201ENST00000406079 803 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ACTR3BP6-201ENST00000422332 1241 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OR4C10P-201ENST00000434991 931 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 DYNLT3P2-201ENST00000442517 295 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL049714.1-201ENST00000466686 347 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 GMPSP1-201ENST00000514075 579 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-699P-201ENST00000517081 110 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC024224.1-201ENST00000538284 609 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC105129.1-201ENST00000560250 297 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC018552.3-201ENST00000567416 561 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SNORD39.2-201ENST00000579995 76 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OR6R2P-201ENST00000609216 300 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNA5SP196-201ENST00000625967 102 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 USP9YP4-201ENST00000424401 1745 ntBASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC6.24□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC010615.1-201ENST00000594254 1764 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 PCAT14-202ENST00000627127 3935 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL161781.1-201ENST00000354277 403 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.60-201ENST00000362831 98 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-450P-201ENST00000364654 107 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 UBBP2-201ENST00000376781 231 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SNORD116-11-201ENST00000383882 92 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RPS26P8-201ENST00000393490 348 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-628P-201ENST00000410675 107 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC017078.1-201ENST00000416146 368 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC092832.1-201ENST00000422934 400 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RAC1P6-201ENST00000423911 575 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SNAP23P1-201ENST00000433229 246 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 CEACAMP6-201ENST00000452007 574 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SNORD127-201ENST00000458892 86 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC008562.1-201ENST00000521763 330 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AP003385.6-201ENST00000531603 374 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MGST1-215ENST00000540056 546 ntTSL 3 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC128657.1-201ENST00000549459 145 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL353997.4-201ENST00000586196 166 ntBASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 213.8 ms