Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 HMGB1P24-202ENST00000615653 685 ntBASIC4.78□□□□□ -1.64
EPHB3P54753 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
EPHB3P54753 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.78□□□□□ -1.64
EPHB3P54753 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
EPHB3P54753 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
EPHB3P54753 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.78□□□□□ -1.64
EPHB3P54753 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
EPHB3P54753 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
EPHB3P54753 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.77□□□□□ -1.65
EPHB3P54753 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.77□□□□□ -1.65
EPHB3P54753 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 AC107081.3-201ENST00000612715 2034 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 AC097714.1-201ENST00000511272 1647 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 RNU5E-8P-201ENST00000363502 116 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 RNU1-85P-201ENST00000364127 164 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 RN7SKP227-201ENST00000364445 330 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 SNORA63.7-201ENST00000365579 123 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 OR6C66P-201ENST00000414917 930 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 TMSB10P2-201ENST00000416049 131 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 MED13P1-201ENST00000428342 171 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 RPS29P17-201ENST00000430795 166 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.77□□□□□ -1.65
EPHB3P54753 TIMM9P1-201ENST00000436122 256 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 RPL21P23-201ENST00000446654 460 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AC005297.2-201ENST00000450430 606 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 EIF4A1P11-201ENST00000451239 222 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 RPL30P15-201ENST00000457129 321 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AP000942.1-201ENST00000463969 747 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 RN7SL303P-201ENST00000469773 251 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 RN7SKP96-201ENST00000516948 297 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.77□□□□□ -1.65
EPHB3P54753 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.77□□□□□ -1.65
EPHB3P54753 MIR4790-201ENST00000577799 79 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.77□□□□□ -1.65
EPHB3P54753 MIR3939-201ENST00000582614 106 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AC113194.1-201ENST00000606037 500 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AL157817.1-201ENST00000614264 790 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.77□□□□□ -1.65
EPHB3P54753 OR52H1-202ENST00000641796 1061 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 ZNF807-201ENST00000328088 1707 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.77□□□□□ -1.65
EPHB3P54753 BTBD10P1-201ENST00000549824 1352 ntBASIC4.77□□□□□ -1.65
EPHB3P54753 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.77□□□□□ -1.65
EPHB3P54753 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
EPHB3P54753 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
EPHB3P54753 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 TAB3P1-202ENST00000452645 1634 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
EPHB3P54753 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
EPHB3P54753 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 Y_RNA.482-201ENST00000384377 111 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 RN7SKP235-201ENST00000410662 305 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 VDAC1P9-201ENST00000412766 841 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AC011933.1-201ENST00000413334 321 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 AL139396.1-201ENST00000421137 167 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 SKA2P1-201ENST00000425592 390 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.76□□□□□ -1.65
EPHB3P54753 MTATP6P16-201ENST00000434543 526 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.76□□□□□ -1.65
EPHB3P54753 AC108734.1-201ENST00000439549 399 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AC116533.1-201ENST00000459748 321 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 Y_RNA.654-201ENST00000497848 106 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 RNU6-273P-201ENST00000516937 96 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 RNA5SP454-201ENST00000517231 127 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.76□□□□□ -1.65
EPHB3P54753 AP005902.1-201ENST00000521358 186 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.76□□□□□ -1.65
EPHB3P54753 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.76□□□□□ -1.65
EPHB3P54753 AF038458.1-201ENST00000588406 262 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 AL390240.1-201ENST00000612950 384 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 uc_338.11-201ENST00000619132 160 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
EPHB3P54753 AC009951.1-201ENST00000623674 2614 ntBASIC4.76□□□□□ -1.65
EPHB3P54753 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
EPHB3P54753 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
EPHB3P54753 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 228.8 ms