Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SULT1C2P1-202ENST00000562418 459 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 GLUD1P4-201ENST00000590914 418 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL355297.3-201ENST00000604082 446 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL121932.1-201ENST00000605542 214 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC145207.9-201ENST00000623802 325 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ZNF734P-201ENST00000419494 1534 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC005261.2-201ENST00000593427 4258 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU1-115P-201ENST00000365329 160 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SNORD96B-201ENST00000386148 79 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 DHFRP6-201ENST00000401776 268 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MORN2-203ENST00000409131 544 ntTSL 5 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC104332.1-201ENST00000440471 797 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL121871.1-201ENST00000443413 436 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RBMY2TP-201ENST00000451162 947 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU7-182P-201ENST00000459009 62 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RN7SKP283-201ENST00000517197 270 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AF279873.1-201ENST00000523393 313 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL118558.2-201ENST00000556294 238 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC138761.3-201ENST00000579993 334 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR3910-1-201ENST00000580936 111 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC015967.1-201ENST00000619893 476 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC092608.2-201ENST00000624427 218 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL442639.1-201ENST00000625030 1899 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC008013.2-202ENST00000637965 364 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 STX3-208ENST00000641815 3236 ntBASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.29□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 LYST-202ENST00000389794 12985 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 DDX18P4-201ENST00000511690 1966 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SNORD3E-201ENST00000362899 217 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-1252P-201ENST00000363054 104 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-1279P-201ENST00000383917 103 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR129-1-201ENST00000384972 72 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL031679.1-201ENST00000400616 525 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL080315.1-201ENST00000406055 466 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC139712.2-201ENST00000424302 339 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 OR2AS1P-201ENST00000427827 319 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 HMGB1P9-201ENST00000429856 646 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MTND5P15-201ENST00000434246 349 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC093156.1-201ENST00000440382 670 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 OSTCP8-201ENST00000445117 448 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RPS29P15-201ENST00000458329 171 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU7-180P-201ENST00000459240 63 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 COX6B1P6-201ENST00000522347 255 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC103843.2-201ENST00000530523 682 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RN7SL802P-201ENST00000577858 299 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR3146-201ENST00000580367 79 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR4513-201ENST00000581077 86 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RN7SL690P-201ENST00000582087 240 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC023043.2-201ENST00000589678 1026 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ARF4P1-201ENST00000605447 541 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PISRT1.1-201ENST00000616930 107 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 uc_338.34-201ENST00000617467 174 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MTCO1P7-201ENST00000419523 1542 ntBASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC6.27□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.27□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 228.6 ms