Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL627390.1-201ENST00000396055 340 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 HNRNPDP2-201ENST00000406475 478 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC023347.2-201ENST00000433994 462 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.54□□□□□ -2
SHANK3Q9BYB0 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC027104.1-201ENST00000563702 681 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC012360.2-201ENST00000609349 391 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SHANK3Q9BYB0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SHANK3Q9BYB0 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.54□□□□□ -2
SHANK3Q9BYB0 RNU6-452P-201ENST00000384406 107 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 RPL23AP39-201ENST00000415533 405 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC090543.1-201ENST00000492168 485 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC079610.2-201ENST00000604818 690 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC011374.2-201ENST00000607135 526 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SHANK3Q9BYB0 MTND5P35-201ENST00000557537 1720 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC006378.2-201ENST00000623178 2476 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 RNA5SP167-201ENST00000365461 116 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC234782.4-201ENST00000417646 1048 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 ATP5F1P1-201ENST00000433775 569 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 SNRPFP4-201ENST00000456366 242 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 AP000873.1-201ENST00000463987 400 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC146507.1-201ENST00000468335 354 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 SNORA48.9-201ENST00000516419 162 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 HMGB1P46-201ENST00000520062 610 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 AC105429.2-201ENST00000610567 517 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 U6.48-201ENST00000618523 106 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.53□□□□□ -2
SHANK3Q9BYB0 AL359740.1-201ENST00000624340 592 ntBASIC2.53□□□□□ -2
SHANK3Q9BYB0 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
SHANK3Q9BYB0 AC011978.2-201ENST00000569835 2054 ntBASIC2.53□□□□□ -2.01
SHANK3Q9BYB0 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC008568.2-201ENST00000623862 2313 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 RNU4-74P-201ENST00000411280 161 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 MTND2P16-201ENST00000419987 799 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 HGF-207ENST00000453018 721 ntTSL 3 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 RPL21P134-201ENST00000453468 483 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 MIR3670-2-201ENST00000582974 65 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 MIR3670-1-201ENST00000584160 65 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 MIR3670-3-201ENST00000584855 65 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC007687.1-201ENST00000602704 304 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 RNA5SP108-201ENST00000605921 117 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 MIR3670-4-201ENST00000612260 65 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC084768.2-201ENST00000622736 221 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AC093536.2-201ENST00000565257 1406 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 AL512283.1-201ENST00000606756 1384 ntBASIC2.52□□□□□ -2.01
SHANK3Q9BYB0 U3.15-201ENST00000365398 212 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-1-201ENST00000383898 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-42P-201ENST00000384165 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-36P-201ENST00000384172 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-4P-201ENST00000384205 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-5P-201ENST00000384238 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-3P-201ENST00000384314 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-2-201ENST00000384627 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-9-201ENST00000384776 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-33P-201ENST00000384793 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 HMGN2P35-201ENST00000412164 270 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AL049737.1-201ENST00000413920 1403 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC109583.1-201ENST00000432156 268 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms