Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MRPL49P2-201ENST00000521066 465 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AP000763.2-201ENST00000540641 163 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SNORA74C-1-201ENST00000580726 201 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR4424-201ENST00000585257 86 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 BNIP3P25-201ENST00000596023 559 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL391813.2-201ENST00000609113 322 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.33□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.493-201ENST00000384422 102 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR320B1-201ENST00000390209 79 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.645-201ENST00000391229 102 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 YME1L1P1-201ENST00000429435 297 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 YWHAZP8-201ENST00000436935 731 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MTND6P5-201ENST00000448266 512 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MTND1P17-201ENST00000448961 204 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 GSTA11P-201ENST00000452866 669 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PABPC1P3-201ENST00000469174 459 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-1213P-201ENST00000517075 94 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MAGOH2P-202ENST00000584384 429 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL138721.1-201ENST00000616756 179 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR8062-201ENST00000621515 85 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 A2MP1-204ENST00000566278 4130 ntBASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-890P-201ENST00000384121 107 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.555-201ENST00000384673 110 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL360182.1-201ENST00000397433 468 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 NDUFB4P4-201ENST00000404822 243 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU2-29P-201ENST00000410423 189 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PGBD4P6-201ENST00000421501 610 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RPL23AP4-201ENST00000427757 463 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC026410.2-201ENST00000460281 156 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.654-201ENST00000497848 106 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AP003497.1-201ENST00000528472 562 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AP005435.4-201ENST00000529514 284 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC023157.2-201ENST00000540596 141 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MEG8-218ENST00000556720 456 ntTSL 3 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MIR5699-201ENST00000578903 90 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC011471.1-201ENST00000585766 187 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL445487.1-201ENST00000415694 1580 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 KPNA2P1-201ENST00000458289 1591 ntBASIC6.31□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL139276.1-201ENST00000311910 1001 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL590240.1-201ENST00000334118 313 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.512-201ENST00000384518 102 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-713P-201ENST00000384761 107 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL034374.1-201ENST00000406329 351 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RPL36AP10-201ENST00000421785 322 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC005019.1-201ENST00000436455 431 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-1132P-201ENST00000459214 107 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU7-27P-201ENST00000459281 62 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RPL23AP12-201ENST00000467573 473 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC011276.1-201ENST00000469688 323 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 MED28P2-201ENST00000475771 317 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 SNORA31.9-201ENST00000516429 84 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-256P-201ENST00000516747 97 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 RNU6-182P-201ENST00000516970 105 ntBASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC6.3□□□□□ -1.4
SENP3-EIF4A1A0A087X0R7 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 231.7 ms