Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SHANK3Q9BYB0 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 RNY1-201ENST00000364228 113 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 RNU6-244P-201ENST00000391028 104 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AL021407.1-201ENST00000404531 386 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC244453.4-201ENST00000419150 388 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AL445685.2-201ENST00000422551 342 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 RPL30P3-201ENST00000424262 333 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC092451.1-201ENST00000480211 153 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC007182.2-201ENST00000489251 402 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 MTATP6P25-201ENST00000574491 261 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 PCNAP1-202ENST00000595299 752 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC242628.1-201ENST00000606810 391 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.57□□□□□ -2
SHANK3Q9BYB0 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.57□□□□□ -2
SHANK3Q9BYB0 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SHANK3Q9BYB0 RNU6-392P-201ENST00000364926 101 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 AC083799.1-201ENST00000366451 910 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SHANK3Q9BYB0 HSPE1P26-201ENST00000405341 275 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 AL358075.3-201ENST00000426289 226 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 AL590762.3-201ENST00000436372 640 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 SDR42E1P3-201ENST00000438345 502 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 AL137159.1-201ENST00000452808 512 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 RPL23AP63-201ENST00000498752 471 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 AC093770.1-201ENST00000511559 571 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 HMGB1P1-201ENST00000522557 636 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 ARL2BPP2-201ENST00000550907 489 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 Y_RNA.783-201ENST00000613546 102 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 AC010297.1-201ENST00000623948 149 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.57□□□□□ -2
SHANK3Q9BYB0 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
SHANK3Q9BYB0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
SHANK3Q9BYB0 FAM35CP-201ENST00000554755 2470 ntBASIC2.57□□□□□ -2
SHANK3Q9BYB0 MIR124-3-201ENST00000384866 87 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 MTND2P21-201ENST00000436242 1042 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 HSPE1P28-201ENST00000443139 211 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC008571.1-201ENST00000467232 300 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC025459.1-201ENST00000504072 156 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC117532.1-201ENST00000514638 323 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 RNU6-826P-201ENST00000516827 104 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC011468.4-201ENST00000603942 409 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC073111.2-201ENST00000605657 1075 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 ZNF33CP-201ENST00000432492 2030 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AP001486.2-201ENST00000561652 5113 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC233981.2-201ENST00000611524 1614 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 SNORA27.3-201ENST00000364937 134 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 FO393419.3-201ENST00000428741 282 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 ELOCP11-201ENST00000436690 332 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 HMGB1P31-201ENST00000437242 427 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 ELOCP16-201ENST00000444494 332 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC007395.1-201ENST00000451333 677 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 RNU7-95P-201ENST00000459222 64 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 RPS26P21-201ENST00000475397 348 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 AC068790.3-201ENST00000602988 553 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 SUMO2P14-201ENST00000604488 293 ntBASIC2.56□□□□□ -2
SHANK3Q9BYB0 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.56□□□□□ -2
SHANK3Q9BYB0 Y_RNA.178-201ENST00000363832 102 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
SHANK3Q9BYB0 RPS3AP9-201ENST00000417027 792 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 ZNF965P-201ENST00000432501 817 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 RPS4XP11-201ENST00000446897 772 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 HMGB3P30-201ENST00000457863 606 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 AC092754.2-201ENST00000463506 460 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 AP000852.1-201ENST00000472460 573 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.55□□□□□ -2
SHANK3Q9BYB0 IGLV3-17-201ENST00000519099 244 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.55□□□□□ -2
SHANK3Q9BYB0 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.55□□□□□ -2
SHANK3Q9BYB0 MIR4452-201ENST00000583004 71 ntBASIC2.55□□□□□ -2
SHANK3Q9BYB0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 AC244517.1-201ENST00000606030 2086 ntBASIC2.54□□□□□ -2
SHANK3Q9BYB0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
SHANK3Q9BYB0 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms