Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 API5P2-201ENST00000397055 1498 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AL139811.1-201ENST00000424779 2299 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 MTND4P31-201ENST00000425607 1343 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 RNU6-185P-201ENST00000384421 107 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 MIR591-201ENST00000385290 95 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 CCNB2P1-201ENST00000399411 1150 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AL589655.1-201ENST00000405398 482 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AC005005.2-201ENST00000420779 380 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 DPPA2P1-201ENST00000428060 556 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 FO393414.1-201ENST00000428697 1184 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AL445669.2-201ENST00000454425 421 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 MTND4LP22-201ENST00000508209 276 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AC135279.1-201ENST00000543493 504 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 POLR2KP1-201ENST00000553226 168 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AL161713.1-201ENST00000555538 145 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 AL138785.1-201ENST00000425821 331 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 RPS7P5-201ENST00000441482 581 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 MLLT10P2-201ENST00000506434 249 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 FAM92A1P1-201ENST00000528023 890 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 AC067805.1-201ENST00000559344 470 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 AC023158.1-201ENST00000561632 1025 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 MIR4255-201ENST00000579351 72 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 LRRC37A5P-203ENST00000580181 585 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 MAGOH2P-202ENST00000584384 429 ntBASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.61□□□□□ -1.99
SHANK3Q9BYB0 RNU1-57P-201ENST00000384491 166 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 SNORA40.18-201ENST00000391200 128 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AL358453.1-201ENST00000422522 250 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 ATP5J2P3-201ENST00000451550 258 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 PTGES3P5-201ENST00000455109 434 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AP002345.1-201ENST00000456493 928 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 RNU6-775P-201ENST00000459318 96 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 ZNF92P3-201ENST00000596594 954 ntBASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.6□□□□□ -1.99
SHANK3Q9BYB0 METTL21EP-201ENST00000298105 713 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 Z86062.1-201ENST00000406773 777 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AC092685.1-201ENST00000447960 1243 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AC107398.1-201ENST00000486904 505 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 LTV1P1-201ENST00000510683 1237 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 RPS3AP4-201ENST00000555161 764 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 NF1P5-201ENST00000588287 448 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 AL356280.1-201ENST00000603614 379 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 SNRPGP19-201ENST00000603826 189 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 PVT1_3.1-201ENST00000620853 95 ntBASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SHANK3Q9BYB0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.59□□□□□ -2
SHANK3Q9BYB0 HMGB1P13-201ENST00000406019 642 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC092832.1-201ENST00000422934 400 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 TRAPPC13P1-201ENST00000435991 1062 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC129850.1-201ENST00000436203 508 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 RPL39P40-201ENST00000445481 146 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 FABP5P13-201ENST00000452144 328 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 HMGB3P15-201ENST00000507326 574 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 MTATP6P22-201ENST00000507369 598 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 snoZ278.1-201ENST00000517059 112 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 AP000889.2-201ENST00000532684 490 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 MYL12BP1-201ENST00000569826 507 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 MIR3683-201ENST00000580847 82 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.59□□□□□ -2
SHANK3Q9BYB0 AP003072.4-201ENST00000624580 310 ntBASIC2.59□□□□□ -2
SHANK3Q9BYB0 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC2.58□□□□□ -2
SHANK3Q9BYB0 MTND5P3-201ENST00000438536 1800 ntBASIC2.58□□□□□ -2
SHANK3Q9BYB0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms