Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HMGB3P21-201ENST00000452483 547 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 AC092798.1-201ENST00000458542 409 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 AC108157.1-201ENST00000510511 539 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 AMZ2P1-203ENST00000565833 850 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 MIR5002-201ENST00000584713 97 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 MIR6504-201ENST00000613520 61 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 MIR7973-1-201ENST00000614683 76 ntBASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.71□□□□□ -1.98
SHANK3Q9BYB0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 AL355578.1-201ENST00000607405 1328 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 MIR6073-201ENST00000352083 89 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 AC013404.1-201ENST00000413068 249 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 SAR1AP4-201ENST00000429225 591 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 YWHAZP7-201ENST00000436906 631 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 AC023050.1-201ENST00000498198 304 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 APOOP1-201ENST00000604695 592 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 AC126118.1-201ENST00000607744 628 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 AC092650.2-201ENST00000619984 902 ntBASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SHANK3Q9BYB0 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC000367.1-201ENST00000452711 1766 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 SETP8-201ENST00000435341 628 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC093392.2-201ENST00000450682 337 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AL121594.1-201ENST00000475906 575 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 FABP5P6-201ENST00000510588 409 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 RNU6-760P-201ENST00000516078 97 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC110588.1-201ENST00000559699 137 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AL354943.1-201ENST00000572103 781 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AC245128.3-201ENST00000594721 748 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 AL391834.1-201ENST00000609609 560 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 MIR6132-201ENST00000622083 109 ntBASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.69□□□□□ -1.98
SHANK3Q9BYB0 RNU2-68P-201ENST00000410878 191 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 NDUFA5P10-201ENST00000432147 357 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 TVP23BP2-201ENST00000455082 615 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 RPS29P11-201ENST00000496507 171 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 SUMO1P1-201ENST00000497904 306 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 HMGB1P47-201ENST00000511281 589 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 RAC1P5-201ENST00000512182 576 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 RNU6-551P-201ENST00000516661 103 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 DNAJC19P9-201ENST00000555084 351 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC023043.3-201ENST00000593113 385 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 MTND4P11-201ENST00000417020 1058 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC008173.1-201ENST00000418901 264 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AL353093.1-201ENST00000441292 436 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 RNU6-1004P-201ENST00000516584 111 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 WISP1-OT1-201ENST00000602893 642 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 AC048347.1-201ENST00000624621 427 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 CFTRP2-201ENST00000634304 199 ntBASIC2.68□□□□□ -1.98
SHANK3Q9BYB0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 RNF6P1-201ENST00000444889 1784 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 SNORA51.11-201ENST00000384442 131 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 AC104332.2-201ENST00000429959 156 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 MED6P1-201ENST00000439659 713 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 MTND2P8-201ENST00000450555 1025 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 RPS15AP17-201ENST00000470598 390 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 MTND3P6-201ENST00000485242 339 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 AC005912.1-201ENST00000495392 255 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 MIR3199-1-201ENST00000582434 88 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 AC083899.3-201ENST00000603413 594 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 BX248123.2-201ENST00000606318 124 ntBASIC2.67□□□□□ -1.98
SHANK3Q9BYB0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 RPL31P52-201ENST00000407532 367 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 Z73417.1-201ENST00000447373 778 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AC006483.1-201ENST00000487308 313 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms