Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC012213.4-201ENST00000606457 354 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 MIR6873-201ENST00000622788 63 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 RN7SKP32-201ENST00000410167 303 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 MTCO2P17-201ENST00000424336 677 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 USP9YP7-201ENST00000436723 430 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 USP9YP32-201ENST00000452432 430 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 MIR5007-201ENST00000583098 95 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 RN7SL622P-201ENST00000585292 275 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AC011494.1-201ENST00000596454 237 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AC128687.1-201ENST00000605304 619 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AC034236.3-201ENST00000605999 461 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 AP001521.1-201ENST00000609150 300 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 LRRC77P-213ENST00000637727 880 ntBASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHANK3Q9BYB0 CUL1P1-201ENST00000509510 2425 ntBASIC3□□□□□ -1.93
SHANK3Q9BYB0 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SHANK3Q9BYB0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 MTATP6P11-201ENST00000428071 670 ntBASIC3□□□□□ -1.93
SHANK3Q9BYB0 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 MTCYBP20-201ENST00000524239 1129 ntBASIC3□□□□□ -1.93
SHANK3Q9BYB0 AC020895.1-201ENST00000595362 272 ntBASIC3□□□□□ -1.93
SHANK3Q9BYB0 MIR6779-201ENST00000617283 64 ntBASIC3□□□□□ -1.93
SHANK3Q9BYB0 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 BX005019.1-201ENST00000561881 1810 ntBASIC3□□□□□ -1.93
SHANK3Q9BYB0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
SHANK3Q9BYB0 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3□□□□□ -1.93
SHANK3Q9BYB0 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC022022.1-201ENST00000430304 178 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 FAM60CP-201ENST00000591086 664 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC067747.1-201ENST00000608026 250 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC117490.2-201ENST00000610042 594 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC026241.1-201ENST00000517873 2142 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AL139276.1-201ENST00000311910 1001 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 COX6CP2-201ENST00000444980 225 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 BUD31P2-201ENST00000449374 300 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC243772.1-201ENST00000451620 410 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 RPL23AP44-201ENST00000482216 473 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC108078.2-201ENST00000510750 236 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 RNA5SP490-201ENST00000517141 136 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 MTND5P21-201ENST00000531961 522 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AP004372.1-201ENST00000604842 844 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AL359821.1-201ENST00000605519 182 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AL391813.2-201ENST00000609113 322 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AL160394.1-201ENST00000624765 724 ntBASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.99□□□□□ -1.93
SHANK3Q9BYB0 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 RNA5SP325-201ENST00000363756 130 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 RNA5SP88-201ENST00000365560 109 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 RNU6-225P-201ENST00000384613 103 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 RNU6-564P-201ENST00000410983 104 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AL513175.2-201ENST00000422071 443 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 RPL7P54-201ENST00000438336 674 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC022431.1-201ENST00000450941 438 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 MTCO3P42-201ENST00000509488 518 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 MTCO3P39-201ENST00000514812 518 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 MIR449C-201ENST00000516047 92 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AP003385.6-201ENST00000531603 374 ntBASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC2.98□□□□□ -1.93
SHANK3Q9BYB0 AL022099.1-201ENST00000604551 712 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 799.9 ms