Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU2-6P-201ENST00000411404 190 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 RPL31P53-201ENST00000457065 348 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC092185.1-201ENST00000491371 97 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 FAM92A1P2-202ENST00000504766 877 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 RN7SKP96-201ENST00000516948 297 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC025857.1-201ENST00000525252 377 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 FAM106CP-201ENST00000582212 507 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 MIR6766-201ENST00000622641 72 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AL359893.1-201ENST00000447628 1580 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC092326.2-201ENST00000624772 1561 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 GABPAP-201ENST00000419271 1356 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 RNA5SP129-201ENST00000410276 118 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AL606490.7-201ENST00000433136 191 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AL354710.1-201ENST00000453641 246 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 RPL21P18-201ENST00000469899 480 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 RNU6-295P-201ENST00000516901 104 ntBASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 AC090229.1-201ENST00000590983 1609 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AC110792.3-201ENST00000595906 1614 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AC025125.1-201ENST00000624743 1922 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 MIR337-201ENST00000362281 93 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AL591416.1-201ENST00000404015 867 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 NCSTNP1-201ENST00000406229 144 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 HMGN1P8-201ENST00000463578 288 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 RPL23AP49-201ENST00000492925 468 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 OR8X1P-201ENST00000534542 869 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AC025260.1-201ENST00000548858 430 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 AC019131.2-201ENST00000609071 870 ntBASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SHANK3Q9BYB0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 ZNF355P-201ENST00000427301 3216 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL139156.1-201ENST00000412785 841 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AC007390.1-201ENST00000415722 356 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AC012498.1-201ENST00000424037 437 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 ARF4P2-201ENST00000430209 526 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AC007677.1-201ENST00000445757 515 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AP001086.1-201ENST00000494882 321 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.6-201ENST00000603753 252 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.11-201ENST00000604059 253 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.10-201ENST00000604330 253 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AC008162.1-201ENST00000604718 254 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.1-201ENST00000604752 252 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.2-201ENST00000604983 252 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.5-201ENST00000605253 252 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.4-201ENST00000605279 254 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.12-201ENST00000605291 253 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.8-201ENST00000605353 252 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.9-201ENST00000605428 253 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL670379.7-201ENST00000605823 252 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 CR589904.2-201ENST00000612533 440 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 AL445437.1-201ENST00000623157 3087 ntBASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
SHANK3Q9BYB0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 HMGB1P11-201ENST00000413899 637 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 RPS26P30-201ENST00000443431 335 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AL035551.1-201ENST00000446931 348 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AL024509.2-201ENST00000493462 493 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AC009487.2-201ENST00000420969 6821 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 SNORA41-201ENST00000384675 132 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AL645939.1-201ENST00000453429 797 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AL049830.2-201ENST00000480072 201 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AC104090.1-201ENST00000506341 1171 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 AC117525.1-201ENST00000515228 503 ntBASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.02□□□□□ -1.93
SHANK3Q9BYB0 VN1R80P-201ENST00000597126 338 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 171.2 ms