Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 U4.3-201ENST00000621047 82 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 OR10AB1P-202ENST00000641219 1686 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 RNU1-73P-201ENST00000383971 164 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 SNORA17.3-201ENST00000391159 129 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AL024474.1-201ENST00000404655 591 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 TAF9P1-201ENST00000445421 515 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 TAF9P2-201ENST00000454958 515 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 VN1R17P-201ENST00000472048 1090 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AC021146.5-201ENST00000503544 545 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 SNORD116-30-201ENST00000516468 85 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 OR5BN1P-201ENST00000532955 829 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AL133370.2-201ENST00000619934 439 ntBASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHANK3Q9BYB0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 SNORD6-201ENST00000365444 73 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 RNU6-178P-201ENST00000384631 104 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 RPL23AP42-201ENST00000471152 471 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 HAUS1P1-201ENST00000505275 832 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 CKS1BP7-201ENST00000522230 235 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AL135786.2-201ENST00000608422 615 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 Y_RNA.122-201ENST00000363331 96 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 RNU6-328P-201ENST00000390887 106 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 NPM1P10-201ENST00000398310 865 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 RPL5P19-201ENST00000404228 893 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 GSTA9P-201ENST00000406231 611 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 MTND4LP12-201ENST00000448237 295 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 TRAV11-201ENST00000539512 339 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AC008083.2-201ENST00000546707 476 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AL136981.2-201ENST00000617319 734 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 AL133412.1-201ENST00000380194 2992 ntBASIC3.16□□□□□ -1.9
SHANK3Q9BYB0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
SHANK3Q9BYB0 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
SHANK3Q9BYB0 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 RNU1-17P-201ENST00000363022 152 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 AL162578.1-201ENST00000406202 378 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 RN7SKP140-201ENST00000411196 284 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 ATG3P1-201ENST00000419507 911 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 MTND4LP13-201ENST00000425022 298 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 RNA5SP480-201ENST00000516840 109 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 MTCYBP28-201ENST00000566728 1132 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 RPP40P2-201ENST00000603596 712 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 AL450489.1-201ENST00000612071 468 ntBASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SHANK3Q9BYB0 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 Z99127.2-201ENST00000441426 334 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 OR6C72P-201ENST00000451403 892 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AP000926.1-201ENST00000479573 241 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 LINC00888-204ENST00000487386 421 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 NDUFB4P9-201ENST00000511646 388 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AP001317.1-201ENST00000531194 960 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AL109809.4-201ENST00000603520 2185 ntBASIC3.14□□□□□ -1.91
SHANK3Q9BYB0 AL356292.1-201ENST00000283110 373 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 RPS20P25-201ENST00000412447 352 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 195.2 ms