Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC017076.1-201ENST00000607613 578 ntBASIC3.22□□□□□ -1.89
SHANK3Q9BYB0 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 AL592437.1-201ENST00000443781 492 ntBASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 TXNP6-201ENST00000510190 310 ntBASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 AC010928.3-201ENST00000587712 541 ntBASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 AC009318.2-201ENST00000610917 651 ntBASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
SHANK3Q9BYB0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 Z73965.1-201ENST00000623412 2297 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AC004520.1-201ENST00000608362 1413 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 MIR499A-201ENST00000384903 122 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AL590004.2-201ENST00000404787 371 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 RAB9AP5-201ENST00000437794 597 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 RAB9AP2-201ENST00000443911 597 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 HMGB1P48-201ENST00000446155 598 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 ST13P20-201ENST00000447996 1065 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AL389895.1-201ENST00000554127 252 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 AC010615.3-201ENST00000597319 394 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 snoU13.31-201ENST00000607291 104 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHANK3Q9BYB0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-1320P-201ENST00000390838 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNA5SP213-201ENST00000391031 106 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-1269P-201ENST00000391139 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-599P-201ENST00000459383 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-1193P-201ENST00000459461 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 ACTR6P1-201ENST00000514311 1104 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AP000857.1-201ENST00000532151 543 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-368P-201ENST00000620928 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-538P-201ENST00000622329 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC022336.2-201ENST00000568966 2538 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNU6-697P-201ENST00000363348 107 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RNA5SP105-201ENST00000391123 113 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC007064.1-201ENST00000412238 351 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AL121578.1-201ENST00000428051 892 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RPL23AP16-201ENST00000441715 421 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC055855.1-201ENST00000489563 579 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 RPL9P6-201ENST00000492764 598 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AP001960.1-201ENST00000506494 658 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC113398.2-201ENST00000507630 558 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 AL159169.2-201ENST00000610061 1269 ntBASIC3.19□□□□□ -1.9
SHANK3Q9BYB0 MTND5P6-201ENST00000422338 1798 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 RNA5SP210-201ENST00000391034 120 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 RNA5SP239-201ENST00000410218 129 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 USP9YP20-201ENST00000419224 558 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 Z82205.1-201ENST00000428456 297 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 RPL23AP62-201ENST00000463396 453 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AP000893.1-201ENST00000474462 794 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 RPL23AP45-201ENST00000476406 468 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AC126182.1-201ENST00000478134 357 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 NPM1P35-201ENST00000533043 868 ntBASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.18□□□□□ -1.9
SHANK3Q9BYB0 RPL23AP84-201ENST00000571193 464 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 214.8 ms