Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 Y_RNA.118-201ENST00000363300 101 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 MIR34A-201ENST00000385130 110 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 RNU6-482P-201ENST00000391068 107 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 AC046144.1-201ENST00000478559 1853 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 HSPE1P6-201ENST00000479457 291 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 METTL15P1-201ENST00000481421 1045 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 AC108210.2-201ENST00000503681 201 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 GMCL1P2-201ENST00000605230 823 ntBASIC3.9□□□□□ -1.79
SHANK3Q9BYB0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 RANP4-201ENST00000413361 655 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 BX276092.3-201ENST00000424182 230 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 HMGB3P11-201ENST00000440127 604 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 RN7SL20P-201ENST00000488827 297 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 RFPL4AP3-201ENST00000515267 345 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 RNU4-29P-201ENST00000515943 174 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 uc_338.1-201ENST00000612113 180 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 AC019080.5-201ENST00000624891 757 ntBASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SHANK3Q9BYB0 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 NIPA2P5-201ENST00000452282 464 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 RPL23AP23-201ENST00000452590 471 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC002553.2-201ENST00000453217 340 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 SETP12-201ENST00000514068 805 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC234778.2-201ENST00000566241 354 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC026790.2-201ENST00000606282 430 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC022509.4-201ENST00000621404 572 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 PLCE1P1-201ENST00000622094 305 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC092079.1-201ENST00000558620 1985 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 AC107027.3-201ENST00000565095 3473 ntBASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
SHANK3Q9BYB0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 SNORA67.4-201ENST00000384688 142 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 U3.42-201ENST00000408746 214 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 ARL5AP4-201ENST00000430731 512 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 RPS3P1-201ENST00000456781 192 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC134882.1-201ENST00000603738 1676 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 MIR708-201ENST00000390708 88 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 FGF7P3-201ENST00000454645 303 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC078785.3-201ENST00000476607 425 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 RPS6P4-201ENST00000494693 758 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 AC025946.2-201ENST00000603398 234 ntBASIC3.87□□□□□ -1.79
SHANK3Q9BYB0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHANK3Q9BYB0 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.86□□□□□ -1.79
SHANK3Q9BYB0 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
SHANK3Q9BYB0 AL445528.1-201ENST00000426330 420 ntBASIC3.86□□□□□ -1.79
SHANK3Q9BYB0 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC3.86□□□□□ -1.79
SHANK3Q9BYB0 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.86□□□□□ -1.79
SHANK3Q9BYB0 AC090281.1-201ENST00000523019 276 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 195.4 ms