Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AC015813.6-201ENST00000624409 5808 ntBASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 Y_RNA.4-201ENST00000362333 112 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 SNORA9.2-201ENST00000365361 133 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 NECAP1P2-201ENST00000455668 727 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 SUMO2P4-201ENST00000504193 276 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 MIR2276-201ENST00000516886 89 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 AC116158.1-201ENST00000560231 2129 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 RPS4XP5-202ENST00000449995 1334 ntBASIC3.93□□□□□ -1.78
SHANK3Q9BYB0 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 CBX1P4-201ENST00000439415 457 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC064859.1-201ENST00000624741 174 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 HSPA8P1-201ENST00000425843 1833 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC000403.1-201ENST00000613696 3585 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 OR1S2-201ENST00000302592 978 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 Y_RNA.40-201ENST00000362645 93 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 LAP3P1-201ENST00000403648 294 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 RNU6-55P-201ENST00000411092 107 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 RNU6-954P-201ENST00000411355 107 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AL645937.1-202ENST00000421799 937 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 PRDX3P4-201ENST00000470828 747 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC090543.2-201ENST00000483963 348 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC008549.1-201ENST00000512900 643 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 RNA5SP24-201ENST00000516478 95 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC109329.2-201ENST00000519658 482 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 DEFB122-202ENST00000569013 197 ntBASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHANK3Q9BYB0 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AL356057.1-202ENST00000402263 756 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 RPL21P40-201ENST00000428586 483 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AC022018.1-201ENST00000430685 241 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 IGLVIV-53-201ENST00000520107 367 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 OR5G4P-201ENST00000525251 760 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AL358913.1-201ENST00000554342 121 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 AC241585.2-209ENST00000638217 143 ntBASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.91□□□□□ -1.78
SHANK3Q9BYB0 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 RNU6-859P-201ENST00000362728 107 ntBASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 SNORD15B-201ENST00000384714 146 ntBASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 BX679664.1-201ENST00000434429 253 ntBASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 AC008413.1-201ENST00000511864 177 ntBASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 RNU6-964P-201ENST00000516524 69 ntBASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.9□□□□□ -1.78
SHANK3Q9BYB0 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 177.2 ms