Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL356968.1-201ENST00000416622 474 ntBASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 ETF1P3-201ENST00000430422 1160 ntBASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 AL135938.1-201ENST00000443141 297 ntBASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 AC008264.1-201ENST00000447612 367 ntBASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.15□□□□□ -1.75
SHANK3Q9BYB0 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 snoU13.26-201ENST00000459452 105 ntBASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 AP000916.1-201ENST00000533869 835 ntBASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
SHANK3Q9BYB0 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 OR13C3-201ENST00000374781 1108 ntBASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 TRGV5P-201ENST00000419915 354 ntBASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 SKP1P1-201ENST00000438081 489 ntBASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AL109933.2-201ENST00000452651 260 ntBASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AC099489.2-201ENST00000574976 260 ntBASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AC090312.2-201ENST00000582687 378 ntBASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.13□□□□□ -1.75
SHANK3Q9BYB0 RNU6-249P-201ENST00000363016 102 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 RPL7P8-201ENST00000411964 730 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AL589765.3-201ENST00000446084 462 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 SEPT7P3-201ENST00000455017 621 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 RPS4XP13-201ENST00000483219 789 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 RPL23AP73-201ENST00000492507 471 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 PCBP2P3-201ENST00000509726 843 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 RNU6-991P-201ENST00000516168 107 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 HMGB1P6-201ENST00000569046 646 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 ATP1B3P1-201ENST00000605365 821 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 CEP170P1-201ENST00000502249 4587 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC007899.1-201ENST00000412776 775 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 EEF1A1P37-201ENST00000522748 715 ntBASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHANK3Q9BYB0 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 SNORA18.3-201ENST00000384122 132 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 AC108938.1-201ENST00000451204 136 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 AC087312.1-201ENST00000471411 480 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 VN1R90P-201ENST00000595717 726 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 AC015849.2-201ENST00000605738 409 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 AL451049.1-201ENST00000608672 497 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SHANK3Q9BYB0 AC096644.4-201ENST00000563417 2912 ntBASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 U3.12-201ENST00000364498 214 ntBASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 SEPT7P2-202ENST00000398921 823 ntBASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 AC117440.1-201ENST00000474107 571 ntBASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 211 ms