Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 AC092435.4-201ENST00000623012 4159 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 MIR93-201ENST00000385024 80 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 IFNNP1-201ENST00000429219 553 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 MRPS33P4-201ENST00000434892 317 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 AC074367.1-201ENST00000438685 1125 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 AL133477.1-201ENST00000457472 514 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 UBL5P3-201ENST00000475112 231 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 AC025445.1-201ENST00000502728 300 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 HIGD1AP1-201ENST00000550979 275 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 MIR486-1-201ENST00000612171 68 ntBASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SHANK3Q9BYB0 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 MIR422A-201ENST00000362286 90 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 RPS24P12-201ENST00000402084 394 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 RPS29P26-201ENST00000477483 171 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 DUXAP6-201ENST00000553858 601 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AL645568.2-201ENST00000432815 1337 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AL513124.1-201ENST00000450410 614 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AC110794.1-201ENST00000505816 425 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AC091544.4-201ENST00000555268 342 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 AC244517.3-201ENST00000616254 1235 ntBASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.35□□□□□ -1.71
SHANK3Q9BYB0 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AL445529.1-201ENST00000398713 389 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 RPL21P112-201ENST00000434403 463 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AL591623.2-201ENST00000449978 222 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 VN1R104P-201ENST00000505115 1009 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 APOOP4-201ENST00000513530 597 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AP001207.2-201ENST00000519490 539 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AC022882.1-201ENST00000532142 501 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AC011270.1-201ENST00000558606 583 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 AC099654.11-201ENST00000638857 294 ntBASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
SHANK3Q9BYB0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.34□□□□□ -1.72
SHANK3Q9BYB0 AC073073.2-201ENST00000609827 2578 ntBASIC4.34□□□□□ -1.72
SHANK3Q9BYB0 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC017078.1-201ENST00000416146 368 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 ELOCP18-201ENST00000434209 337 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC023598.1-201ENST00000472521 361 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 RN7SL432P-201ENST00000484057 298 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 FCF1P3-201ENST00000496394 590 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC091826.1-201ENST00000514065 313 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 SCARNA20.6-201ENST00000517251 106 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC103783.1-201ENST00000520506 373 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC026333.2-201ENST00000542164 106 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 Z95331.1-201ENST00000623075 23112 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms