Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cstf1Q99LC2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cstf1Q99LC2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC23.75■■□□□ 1.39
Cstf1Q99LC2 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.74■■□□□ 1.39
Cstf1Q99LC2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Cstf1Q99LC2 AC154454.1-201ENSMUST00000225253 216 ntBASIC23.73■■□□□ 1.39
Cstf1Q99LC2 Pcf11-205ENSMUST00000208255 1720 ntBASIC23.73■■□□□ 1.39
Cstf1Q99LC2 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.72■■□□□ 1.39
Cstf1Q99LC2 Mir3960-201ENSMUST00000198213 73 ntBASIC23.72■■□□□ 1.39
Cstf1Q99LC2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cstf1Q99LC2 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Cstf1Q99LC2 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
Cstf1Q99LC2 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Cstf1Q99LC2 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Cstf1Q99LC2 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cstf1Q99LC2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cstf1Q99LC2 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cstf1Q99LC2 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC23.68■■□□□ 1.38
Cstf1Q99LC2 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cstf1Q99LC2 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.66■■□□□ 1.38
Cstf1Q99LC2 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cstf1Q99LC2 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
Cstf1Q99LC2 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cstf1Q99LC2 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Cstf1Q99LC2 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Cstf1Q99LC2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Cstf1Q99LC2 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cstf1Q99LC2 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Cstf1Q99LC2 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cstf1Q99LC2 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Cstf1Q99LC2 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Cstf1Q99LC2 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Cstf1Q99LC2 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Cstf1Q99LC2 Gm45364-201ENSMUST00000210883 159 ntBASIC23.63■■□□□ 1.37
Cstf1Q99LC2 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Cstf1Q99LC2 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
Cstf1Q99LC2 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Cstf1Q99LC2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Cstf1Q99LC2 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC23.62■■□□□ 1.37
Cstf1Q99LC2 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Cstf1Q99LC2 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Cstf1Q99LC2 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Cstf1Q99LC2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Cstf1Q99LC2 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Cstf1Q99LC2 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cstf1Q99LC2 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cstf1Q99LC2 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cstf1Q99LC2 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cstf1Q99LC2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Cstf1Q99LC2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cstf1Q99LC2 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Cstf1Q99LC2 Gm22567-201ENSMUST00000175542 342 ntBASIC23.57■■□□□ 1.36
Cstf1Q99LC2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC23.57■■□□□ 1.36
Cstf1Q99LC2 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Cstf1Q99LC2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
Cstf1Q99LC2 Gm14523-201ENSMUST00000117260 558 ntBASIC23.56■■□□□ 1.36
Cstf1Q99LC2 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Cstf1Q99LC2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Cstf1Q99LC2 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Cstf1Q99LC2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Cstf1Q99LC2 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Cstf1Q99LC2 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Cstf1Q99LC2 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC23.52■■□□□ 1.36
Cstf1Q99LC2 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Cstf1Q99LC2 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.51■■□□□ 1.35
Cstf1Q99LC2 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cstf1Q99LC2 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cstf1Q99LC2 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cstf1Q99LC2 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cstf1Q99LC2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Cstf1Q99LC2 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cstf1Q99LC2 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cstf1Q99LC2 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cstf1Q99LC2 Gm5812-201ENSMUST00000061073 957 ntBASIC23.47■■□□□ 1.35
Cstf1Q99LC2 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cstf1Q99LC2 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cstf1Q99LC2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Cstf1Q99LC2 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Cstf1Q99LC2 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
Cstf1Q99LC2 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Cstf1Q99LC2 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Cstf1Q99LC2 Gm13889-201ENSMUST00000099689 1386 ntBASIC23.44■■□□□ 1.34
Cstf1Q99LC2 Gm12818-201ENSMUST00000117562 1349 ntBASIC23.44■■□□□ 1.34
Cstf1Q99LC2 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Cstf1Q99LC2 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Cstf1Q99LC2 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC23.44■■□□□ 1.34
Cstf1Q99LC2 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Cstf1Q99LC2 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Cstf1Q99LC2 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Cstf1Q99LC2 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Cstf1Q99LC2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Cstf1Q99LC2 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Cstf1Q99LC2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC23.42■■□□□ 1.34
Cstf1Q99LC2 Gm37136-201ENSMUST00000194368 194 ntBASIC23.42■■□□□ 1.34
Cstf1Q99LC2 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Cstf1Q99LC2 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cstf1Q99LC2 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.4■■□□□ 1.34
Cstf1Q99LC2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC23.4■■□□□ 1.34
Cstf1Q99LC2 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cstf1Q99LC2 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 68.2 ms