Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Lsm1Q8VC85 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Lsm1Q8VC85 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
Lsm1Q8VC85 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Lsm1Q8VC85 Gm30023-201ENSMUST00000197970 889 ntBASIC22.61■■□□□ 1.21
Lsm1Q8VC85 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Lsm1Q8VC85 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Lsm1Q8VC85 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Lsm1Q8VC85 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Lsm1Q8VC85 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.59■■□□□ 1.21
Lsm1Q8VC85 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Lsm1Q8VC85 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC22.59■■□□□ 1.21
Lsm1Q8VC85 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Lsm1Q8VC85 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC22.58■■□□□ 1.21
Lsm1Q8VC85 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Lsm1Q8VC85 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Lsm1Q8VC85 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Lsm1Q8VC85 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Lsm1Q8VC85 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
Lsm1Q8VC85 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Lsm1Q8VC85 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Lsm1Q8VC85 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Lsm1Q8VC85 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
Lsm1Q8VC85 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Lsm1Q8VC85 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Lsm1Q8VC85 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Lsm1Q8VC85 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Lsm1Q8VC85 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Lsm1Q8VC85 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Lsm1Q8VC85 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Lsm1Q8VC85 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Lsm1Q8VC85 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Lsm1Q8VC85 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Lsm1Q8VC85 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Lsm1Q8VC85 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Lsm1Q8VC85 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Lsm1Q8VC85 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC22.5■■□□□ 1.19
Lsm1Q8VC85 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Lsm1Q8VC85 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Lsm1Q8VC85 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Lsm1Q8VC85 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Lsm1Q8VC85 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Lsm1Q8VC85 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Lsm1Q8VC85 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Lsm1Q8VC85 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Lsm1Q8VC85 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Lsm1Q8VC85 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Lsm1Q8VC85 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
Lsm1Q8VC85 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Lsm1Q8VC85 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Lsm1Q8VC85 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Lsm1Q8VC85 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Lsm1Q8VC85 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Lsm1Q8VC85 Gm37847-201ENSMUST00000192163 1497 ntBASIC22.47■■□□□ 1.19
Lsm1Q8VC85 Gm31748-201ENSMUST00000194938 1497 ntBASIC22.47■■□□□ 1.19
Lsm1Q8VC85 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Lsm1Q8VC85 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Lsm1Q8VC85 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.46■■□□□ 1.19
Lsm1Q8VC85 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Lsm1Q8VC85 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Lsm1Q8VC85 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC22.45■■□□□ 1.18
Lsm1Q8VC85 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Lsm1Q8VC85 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Lsm1Q8VC85 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Lsm1Q8VC85 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Lsm1Q8VC85 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Lsm1Q8VC85 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.44■■□□□ 1.18
Lsm1Q8VC85 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Lsm1Q8VC85 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
Lsm1Q8VC85 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Lsm1Q8VC85 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Lsm1Q8VC85 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Lsm1Q8VC85 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Lsm1Q8VC85 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Lsm1Q8VC85 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
Lsm1Q8VC85 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Lsm1Q8VC85 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Lsm1Q8VC85 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Lsm1Q8VC85 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
Lsm1Q8VC85 Particl-201ENSMUST00000205370 1560 ntBASIC22.42■■□□□ 1.18
Lsm1Q8VC85 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Lsm1Q8VC85 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Lsm1Q8VC85 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Lsm1Q8VC85 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Lsm1Q8VC85 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Lsm1Q8VC85 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Lsm1Q8VC85 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Lsm1Q8VC85 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Lsm1Q8VC85 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.18
Lsm1Q8VC85 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Lsm1Q8VC85 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Lsm1Q8VC85 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Lsm1Q8VC85 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
Lsm1Q8VC85 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Lsm1Q8VC85 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Lsm1Q8VC85 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Lsm1Q8VC85 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Lsm1Q8VC85 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Lsm1Q8VC85 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Lsm1Q8VC85 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms