Protein–RNA interactions for Protein: Q5R1I1

Trav7d-3, T cell receptor alpha variable 7-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-3Q5R1I1 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav7d-3Q5R1I1 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav7d-3Q5R1I1 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav7d-3Q5R1I1 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav7d-3Q5R1I1 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav7d-3Q5R1I1 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav7d-3Q5R1I1 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav7d-3Q5R1I1 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav7d-3Q5R1I1 Gm45855-201ENSMUST00000212546 880 ntBASIC17.13■□□□□ 0.33
Trav7d-3Q5R1I1 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav7d-3Q5R1I1 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.11■□□□□ 0.33
Trav7d-3Q5R1I1 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav7d-3Q5R1I1 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav7d-3Q5R1I1 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav7d-3Q5R1I1 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav7d-3Q5R1I1 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav7d-3Q5R1I1 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trav7d-3Q5R1I1 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav7d-3Q5R1I1 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC17.08■□□□□ 0.32
Trav7d-3Q5R1I1 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav7d-3Q5R1I1 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav7d-3Q5R1I1 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Trav7d-3Q5R1I1 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav7d-3Q5R1I1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.06■□□□□ 0.32
Trav7d-3Q5R1I1 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav7d-3Q5R1I1 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav7d-3Q5R1I1 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav7d-3Q5R1I1 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Trav7d-3Q5R1I1 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav7d-3Q5R1I1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav7d-3Q5R1I1 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav7d-3Q5R1I1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Trav7d-3Q5R1I1 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav7d-3Q5R1I1 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav7d-3Q5R1I1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav7d-3Q5R1I1 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC17.03■□□□□ 0.32
Trav7d-3Q5R1I1 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav7d-3Q5R1I1 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav7d-3Q5R1I1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.02■□□□□ 0.32
Trav7d-3Q5R1I1 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav7d-3Q5R1I1 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav7d-3Q5R1I1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav7d-3Q5R1I1 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.01■□□□□ 0.31
Trav7d-3Q5R1I1 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trav7d-3Q5R1I1 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav7d-3Q5R1I1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Trav7d-3Q5R1I1 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav7d-3Q5R1I1 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav7d-3Q5R1I1 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
Trav7d-3Q5R1I1 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav7d-3Q5R1I1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trav7d-3Q5R1I1 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trav7d-3Q5R1I1 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav7d-3Q5R1I1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav7d-3Q5R1I1 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav7d-3Q5R1I1 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
Trav7d-3Q5R1I1 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav7d-3Q5R1I1 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav7d-3Q5R1I1 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav7d-3Q5R1I1 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav7d-3Q5R1I1 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav7d-3Q5R1I1 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Trav7d-3Q5R1I1 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav7d-3Q5R1I1 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
Trav7d-3Q5R1I1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav7d-3Q5R1I1 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Trav7d-3Q5R1I1 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms