Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trav6d-4Q5R1I0 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trav6d-4Q5R1I0 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC19.94■□□□□ 0.78
Trav6d-4Q5R1I0 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav6d-4Q5R1I0 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Trav6d-4Q5R1I0 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Trav6d-4Q5R1I0 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav6d-4Q5R1I0 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav6d-4Q5R1I0 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6d-4Q5R1I0 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6d-4Q5R1I0 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6d-4Q5R1I0 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC19.9■□□□□ 0.78
Trav6d-4Q5R1I0 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav6d-4Q5R1I0 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav6d-4Q5R1I0 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav6d-4Q5R1I0 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.87■□□□□ 0.77
Trav6d-4Q5R1I0 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trav6d-4Q5R1I0 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav6d-4Q5R1I0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trav6d-4Q5R1I0 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav6d-4Q5R1I0 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC19.85■□□□□ 0.77
Trav6d-4Q5R1I0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trav6d-4Q5R1I0 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trav6d-4Q5R1I0 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trav6d-4Q5R1I0 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.83■□□□□ 0.77
Trav6d-4Q5R1I0 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav6d-4Q5R1I0 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trav6d-4Q5R1I0 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC19.82■□□□□ 0.76
Trav6d-4Q5R1I0 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav6d-4Q5R1I0 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Trav6d-4Q5R1I0 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Trav6d-4Q5R1I0 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav6d-4Q5R1I0 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav6d-4Q5R1I0 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav6d-4Q5R1I0 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Trav6d-4Q5R1I0 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.76■□□□□ 0.75
Trav6d-4Q5R1I0 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav6d-4Q5R1I0 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Trav6d-4Q5R1I0 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav6d-4Q5R1I0 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.74■□□□□ 0.75
Trav6d-4Q5R1I0 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Trav6d-4Q5R1I0 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC19.74■□□□□ 0.75
Trav6d-4Q5R1I0 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC19.73■□□□□ 0.75
Trav6d-4Q5R1I0 Gm37136-201ENSMUST00000194368 194 ntBASIC19.73■□□□□ 0.75
Trav6d-4Q5R1I0 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav6d-4Q5R1I0 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav6d-4Q5R1I0 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trav6d-4Q5R1I0 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.72■□□□□ 0.75
Trav6d-4Q5R1I0 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav6d-4Q5R1I0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav6d-4Q5R1I0 AC167019.3-201ENSMUST00000228225 1266 ntBASIC19.71■□□□□ 0.75
Trav6d-4Q5R1I0 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav6d-4Q5R1I0 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav6d-4Q5R1I0 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trav6d-4Q5R1I0 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav6d-4Q5R1I0 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trav6d-4Q5R1I0 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav6d-4Q5R1I0 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav6d-4Q5R1I0 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav6d-4Q5R1I0 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trav6d-4Q5R1I0 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav6d-4Q5R1I0 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav6d-4Q5R1I0 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav6d-4Q5R1I0 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav6d-4Q5R1I0 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Trav6d-4Q5R1I0 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6d-4Q5R1I0 Gm6311-201ENSMUST00000073790 878 ntBASIC19.65■□□□□ 0.74
Trav6d-4Q5R1I0 Gm4799-201ENSMUST00000095396 657 ntBASIC19.65■□□□□ 0.74
Trav6d-4Q5R1I0 Gm37847-201ENSMUST00000192163 1497 ntBASIC19.65■□□□□ 0.74
Trav6d-4Q5R1I0 Gm31748-201ENSMUST00000194938 1497 ntBASIC19.65■□□□□ 0.74
Trav6d-4Q5R1I0 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trav6d-4Q5R1I0 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav6d-4Q5R1I0 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trav6d-4Q5R1I0 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav6d-4Q5R1I0 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.63■□□□□ 0.73
Trav6d-4Q5R1I0 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trav6d-4Q5R1I0 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav6d-4Q5R1I0 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav6d-4Q5R1I0 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Trav6d-4Q5R1I0 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.62■□□□□ 0.73
Trav6d-4Q5R1I0 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav6d-4Q5R1I0 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav6d-4Q5R1I0 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav6d-4Q5R1I0 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC19.61■□□□□ 0.73
Trav6d-4Q5R1I0 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC19.6■□□□□ 0.73
Trav6d-4Q5R1I0 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Trav6d-4Q5R1I0 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6d-4Q5R1I0 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms