Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6-3Q5R1E6 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6-3Q5R1E6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6-3Q5R1E6 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trav6-3Q5R1E6 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6-3Q5R1E6 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.91■□□□□ 0.62
Trav6-3Q5R1E6 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-3Q5R1E6 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav6-3Q5R1E6 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-3Q5R1E6 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-3Q5R1E6 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-3Q5R1E6 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-3Q5R1E6 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6-3Q5R1E6 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trav6-3Q5R1E6 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC18.89■□□□□ 0.61
Trav6-3Q5R1E6 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6-3Q5R1E6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav6-3Q5R1E6 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.88■□□□□ 0.61
Trav6-3Q5R1E6 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Trav6-3Q5R1E6 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav6-3Q5R1E6 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.88■□□□□ 0.61
Trav6-3Q5R1E6 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6-3Q5R1E6 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6-3Q5R1E6 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6-3Q5R1E6 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6-3Q5R1E6 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6-3Q5R1E6 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6-3Q5R1E6 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6-3Q5R1E6 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Trav6-3Q5R1E6 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav6-3Q5R1E6 Gm30023-201ENSMUST00000197970 889 ntBASIC18.85■□□□□ 0.61
Trav6-3Q5R1E6 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav6-3Q5R1E6 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav6-3Q5R1E6 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.85■□□□□ 0.61
Trav6-3Q5R1E6 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 Gm45855-201ENSMUST00000212546 880 ntBASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6-3Q5R1E6 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav6-3Q5R1E6 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav6-3Q5R1E6 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trav6-3Q5R1E6 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trav6-3Q5R1E6 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6-3Q5R1E6 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Trav6-3Q5R1E6 Particl-201ENSMUST00000205370 1560 ntBASIC18.81■□□□□ 0.6
Trav6-3Q5R1E6 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6-3Q5R1E6 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.8■□□□□ 0.6
Trav6-3Q5R1E6 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.8■□□□□ 0.6
Trav6-3Q5R1E6 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6-3Q5R1E6 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6-3Q5R1E6 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6-3Q5R1E6 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav6-3Q5R1E6 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trav6-3Q5R1E6 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6-3Q5R1E6 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trav6-3Q5R1E6 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-3Q5R1E6 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-3Q5R1E6 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-3Q5R1E6 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6-3Q5R1E6 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6-3Q5R1E6 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6-3Q5R1E6 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18.75■□□□□ 0.59
Trav6-3Q5R1E6 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6-3Q5R1E6 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6-3Q5R1E6 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6-3Q5R1E6 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.74■□□□□ 0.59
Trav6-3Q5R1E6 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Trav6-3Q5R1E6 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Trav6-3Q5R1E6 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6-3Q5R1E6 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6-3Q5R1E6 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6-3Q5R1E6 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6-3Q5R1E6 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6-3Q5R1E6 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6-3Q5R1E6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6-3Q5R1E6 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6-3Q5R1E6 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6-3Q5R1E6 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6-3Q5R1E6 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6-3Q5R1E6 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.69■□□□□ 0.58
Trav6-3Q5R1E6 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6-3Q5R1E6 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 120.4 ms