Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
Col6a4A2AX52 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a4A2AX52 Gm30023-201ENSMUST00000197970 889 ntBASIC20.16■□□□□ 0.82
Col6a4A2AX52 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col6a4A2AX52 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a4A2AX52 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a4A2AX52 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Col6a4A2AX52 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col6a4A2AX52 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Col6a4A2AX52 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col6a4A2AX52 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col6a4A2AX52 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC20.12■□□□□ 0.81
Col6a4A2AX52 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a4A2AX52 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a4A2AX52 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Col6a4A2AX52 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.1■□□□□ 0.81
Col6a4A2AX52 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a4A2AX52 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a4A2AX52 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.09■□□□□ 0.81
Col6a4A2AX52 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a4A2AX52 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.09■□□□□ 0.81
Col6a4A2AX52 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col6a4A2AX52 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Col6a4A2AX52 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col6a4A2AX52 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Col6a4A2AX52 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.07■□□□□ 0.8
Col6a4A2AX52 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col6a4A2AX52 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col6a4A2AX52 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col6a4A2AX52 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Col6a4A2AX52 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.05■□□□□ 0.8
Col6a4A2AX52 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col6a4A2AX52 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col6a4A2AX52 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col6a4A2AX52 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.04■□□□□ 0.8
Col6a4A2AX52 Gm22567-201ENSMUST00000175542 342 ntBASIC20.03■□□□□ 0.8
Col6a4A2AX52 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.03■□□□□ 0.8
Col6a4A2AX52 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a4A2AX52 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a4A2AX52 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a4A2AX52 Gm27502-201ENSMUST00000183495 199 ntBASIC20.03■□□□□ 0.8
Col6a4A2AX52 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a4A2AX52 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC20.03■□□□□ 0.8
Col6a4A2AX52 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col6a4A2AX52 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col6a4A2AX52 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.02■□□□□ 0.79
Col6a4A2AX52 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a4A2AX52 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a4A2AX52 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a4A2AX52 Gm14523-201ENSMUST00000117260 558 ntBASIC19.99■□□□□ 0.79
Col6a4A2AX52 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a4A2AX52 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a4A2AX52 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Col6a4A2AX52 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a4A2AX52 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a4A2AX52 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.97■□□□□ 0.79
Col6a4A2AX52 Mir3960-201ENSMUST00000198213 73 ntBASIC19.97■□□□□ 0.79
Col6a4A2AX52 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.97■□□□□ 0.79
Col6a4A2AX52 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a4A2AX52 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.96■□□□□ 0.79
Col6a4A2AX52 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.96■□□□□ 0.79
Col6a4A2AX52 Gm10420-201ENSMUST00000121713 882 ntBASIC19.96■□□□□ 0.79
Col6a4A2AX52 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a4A2AX52 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Col6a4A2AX52 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
Col6a4A2AX52 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a4A2AX52 Gm12818-201ENSMUST00000117562 1349 ntBASIC19.94■□□□□ 0.78
Col6a4A2AX52 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a4A2AX52 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Col6a4A2AX52 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a4A2AX52 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a4A2AX52 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Col6a4A2AX52 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a4A2AX52 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a4A2AX52 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.91■□□□□ 0.78
Col6a4A2AX52 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a4A2AX52 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a4A2AX52 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.91■□□□□ 0.78
Col6a4A2AX52 Gm5921-201ENSMUST00000075898 882 ntBASIC19.9■□□□□ 0.78
Col6a4A2AX52 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a4A2AX52 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a4A2AX52 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a4A2AX52 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a4A2AX52 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a4A2AX52 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a4A2AX52 Gm15546-201ENSMUST00000122095 826 ntBASIC19.88■□□□□ 0.77
Col6a4A2AX52 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a4A2AX52 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Col6a4A2AX52 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a4A2AX52 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a4A2AX52 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.87■□□□□ 0.77
Col6a4A2AX52 Gm9910-201ENSMUST00000195385 1550 ntBASIC19.87■□□□□ 0.77
Col6a4A2AX52 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a4A2AX52 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC19.87■□□□□ 0.77
Col6a4A2AX52 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.86■□□□□ 0.77
Col6a4A2AX52 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a4A2AX52 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a4A2AX52 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a4A2AX52 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col6a4A2AX52 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms