Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.17■□□□□ 0.5
Trbv3A0A0A6YYE2 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv3A0A0A6YYE2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv3A0A0A6YYE2 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv3A0A0A6YYE2 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv3A0A0A6YYE2 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trbv3A0A0A6YYE2 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trbv3A0A0A6YYE2 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Trbv3A0A0A6YYE2 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trbv3A0A0A6YYE2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trbv3A0A0A6YYE2 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.14■□□□□ 0.49
Trbv3A0A0A6YYE2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trbv3A0A0A6YYE2 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv3A0A0A6YYE2 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv3A0A0A6YYE2 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv3A0A0A6YYE2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv3A0A0A6YYE2 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv3A0A0A6YYE2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.11■□□□□ 0.49
Trbv3A0A0A6YYE2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trbv3A0A0A6YYE2 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv3A0A0A6YYE2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv3A0A0A6YYE2 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trbv3A0A0A6YYE2 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trbv3A0A0A6YYE2 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trbv3A0A0A6YYE2 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trbv3A0A0A6YYE2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv3A0A0A6YYE2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv3A0A0A6YYE2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv3A0A0A6YYE2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv3A0A0A6YYE2 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv3A0A0A6YYE2 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv3A0A0A6YYE2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
Trbv3A0A0A6YYE2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv3A0A0A6YYE2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv3A0A0A6YYE2 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv3A0A0A6YYE2 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv3A0A0A6YYE2 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Trbv3A0A0A6YYE2 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv3A0A0A6YYE2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trbv3A0A0A6YYE2 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.04■□□□□ 0.48
Trbv3A0A0A6YYE2 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv3A0A0A6YYE2 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv3A0A0A6YYE2 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv3A0A0A6YYE2 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv3A0A0A6YYE2 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv3A0A0A6YYE2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv3A0A0A6YYE2 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.02■□□□□ 0.47
Trbv3A0A0A6YYE2 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.02■□□□□ 0.47
Trbv3A0A0A6YYE2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv3A0A0A6YYE2 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv3A0A0A6YYE2 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv3A0A0A6YYE2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv3A0A0A6YYE2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trbv3A0A0A6YYE2 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv3A0A0A6YYE2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv3A0A0A6YYE2 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv3A0A0A6YYE2 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv3A0A0A6YYE2 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv3A0A0A6YYE2 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv3A0A0A6YYE2 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv3A0A0A6YYE2 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv3A0A0A6YYE2 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC17.98■□□□□ 0.47
Trbv3A0A0A6YYE2 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv3A0A0A6YYE2 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC17.98■□□□□ 0.47
Trbv3A0A0A6YYE2 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Trbv3A0A0A6YYE2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv3A0A0A6YYE2 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Trbv3A0A0A6YYE2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms