Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 tA(UGC)QtA(UGC)Q 76 nt0.15□□□□□ -2.39
MSH4P40965 snR40snR40 97 nt0.1□□□□□ -2.39
MSH4P40965 snR161snR161 161 nt0.03□□□□□ -2.4
MSH4P40965 YJL113WYJL113W 4647 nt-0.05□□□□□ -2.42
MSH4P40965 RPL41BYDL133C-A 78 nt-0.31□□□□□ -2.46
MSH4P40965 snR6snR6 112 nt-0.32□□□□□ -2.46
MSH4P40965 YOR335W-AYOR335W-A 81 nt-0.32□□□□□ -2.46
MSH4P40965 CDC65tQ(CUG)M 72 nt-0.39□□□□□ -2.47
MSH4P40965 YHL009W-BYHL009W-B 5409 nt-0.47□□□□□ -2.49
MSH4P40965 URB1YKL014C 5295 nt-0.49□□□□□ -2.49
MSH4P40965 YMR315W-AYMR315W-A 108 nt-0.49□□□□□ -2.49
MSH4P40965 snR73snR73 106 nt-0.51□□□□□ -2.49
MSH4P40965 snR33snR33 183 nt-0.62□□□□□ -2.51
MSH4P40965 tC(GCA)QtC(GCA)Q 76 nt-0.67□□□□□ -2.52
MSH4P40965 tP(UGG)QtP(UGG)Q 72 nt-0.69□□□□□ -2.52
MSH4P40965 snR58snR58 96 nt-0.72□□□□□ -2.52
MSH4P40965 tT(UGU)G1tT(UGU)G1 72 nt-0.75□□□□□ -2.53
MSH4P40965 tT(UGU)G2tT(UGU)G2 72 nt-0.75□□□□□ -2.53
MSH4P40965 tT(UGU)PtT(UGU)P 72 nt-0.75□□□□□ -2.53
MSH4P40965 YOR309CYOR309C 381 nt-0.82□□□□□ -2.54
MSH4P40965 YNR077CYNR077C 255 nt-1.02□□□□□ -2.57
MSH4P40965 YBR223W-AYBR223W-A 120 nt-1.04□□□□□ -2.58
MSH4P40965 tY(GUA)QtY(GUA)Q 84 nt-1.18□□□□□ -2.6
MSH4P40965 snR87snR87 109 nt-1.2□□□□□ -2.6
MSH4P40965 YBR126W-BYBR126W-B 144 nt-1.77□□□□□ -2.69
MSH4P40965 YDR543CYDR543C 300 nt-2.42□□□□□ -2.8
MSH4P40965 YOL166W-AYOL166W-A 156 nt-2.66□□□□□ -2.84
MSH4P40965 YJL136W-AYJL136W-A 84 nt-2.95□□□□□ -2.88
MSH4P40965 YJR162CYJR162C 351 nt-3.2□□□□□ -2.92
Retrieved 29 of 7,029 protein–RNA pairs in 2.8 ms