Protein–RNA interactions for Protein: P40547

VID28, Vacuolar import and degradation protein 28, yeast

Predictions only

Length 921 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
VID28	P40547	snR53	snR53	91 nt		-0.71	□□□□□ -2.52
VID28	P40547	YDL159W-A	YDL159W-A	132 nt		-0.74	□□□□□ -2.53
VID28	P40547	YGR122C-A	YGR122C-A	129 nt		-0.76	□□□□□ -2.53
VID28	P40547	YDL114W-A	YDL114W-A	114 nt		-0.84	□□□□□ -2.54
VID28	P40547	snR77	snR77	88 nt		-0.85	□□□□□ -2.55
VID28	P40547	tV(UAC)Q	tV(UAC)Q	76 nt		-0.93	□□□□□ -2.56
VID28	P40547	tP(UGG)Q	tP(UGG)Q	72 nt		-0.97	□□□□□ -2.56
VID28	P40547	CDC65	tQ(CUG)M	72 nt		-1.03	□□□□□ -2.57
VID28	P40547	YBR223W-A	YBR223W-A	120 nt		-1.08	□□□□□ -2.58
VID28	P40547	YLR149C-A	YLR149C-A	87 nt		-1.09	□□□□□ -2.58
VID28	P40547	YNR077C	YNR077C	255 nt		-1.09	□□□□□ -2.58
VID28	P40547	YMR315W-A	YMR315W-A	108 nt		-1.2	□□□□□ -2.6
VID28	P40547	tY(GUA)Q	tY(GUA)Q	84 nt		-1.32	□□□□□ -2.62
VID28	P40547	RPL41B	YDL133C-A	78 nt		-1.37	□□□□□ -2.63
VID28	P40547	snR6	snR6	112 nt		-1.38	□□□□□ -2.63
VID28	P40547	YKL096C-B	YKL096C-B	150 nt		-1.39	□□□□□ -2.63
VID28	P40547	YOR335W-A	YOR335W-A	81 nt		-1.45	□□□□□ -2.64
VID28	P40547	YOR309C	YOR309C	381 nt		-1.57	□□□□□ -2.66
VID28	P40547	snR73	snR73	106 nt		-1.6	□□□□□ -2.67
VID28	P40547	snR40	snR40	97 nt		-1.78	□□□□□ -2.69
VID28	P40547	YBR126W-B	YBR126W-B	144 nt		-1.83	□□□□□ -2.7
VID28	P40547	snR75	snR75	89 nt		-1.92	□□□□□ -2.72
VID28	P40547	snR58	snR58	96 nt		-2.09	□□□□□ -2.74
VID28	P40547	tC(GCA)Q	tC(GCA)Q	76 nt		-2.29	□□□□□ -2.78
VID28	P40547	snR87	snR87	109 nt		-2.46	□□□□□ -2.8
VID28	P40547	YDR543C	YDR543C	300 nt		-2.47	□□□□□ -2.8
VID28	P40547	YOL166W-A	YOL166W-A	156 nt		-2.73	□□□□□ -2.85
VID28	P40547	YJR162C	YJR162C	351 nt		-3.27	□□□□□ -2.93
VID28	P40547	YJL136W-A	YJL136W-A	84 nt		-3.63	□□□□□ -2.99

Retrieved 29 of 7,029 protein–RNA pairs in 61.6 ms