Protein–RNA interactions for Protein: Q08685

CLP1, mRNA cleavage and polyadenylation factor CLP1, yeastyeast

Predicted RBP Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CLP1Q08685 tM(CAU)Q2tM(CAU)Q2 78 nt0.15□□□□□ -2.39
CLP1Q08685 YOL013W-AYOL013W-A 192 nt0.15□□□□□ -2.39
CLP1Q08685 YBR099CYBR099C 384 nt0.14□□□□□ -2.39
CLP1Q08685 ESP1YGR098C 4893 nt0.12□□□□□ -2.39
CLP1Q08685 snR39BsnR39B 96 nt0.12□□□□□ -2.39
CLP1Q08685 snR48snR48 113 nt0.12□□□□□ -2.39
CLP1Q08685 YHL015W-AYHL015W-A 84 nt0.11□□□□□ -2.39
CLP1Q08685 tL(UAA)QtL(UAA)Q 85 nt0.1□□□□□ -2.39
CLP1Q08685 EST1YLR233C 2100 nt0.09□□□□□ -2.4
CLP1Q08685 YOR102WYOR102W 351 nt0.09□□□□□ -2.4
CLP1Q08685 YNL198CYNL198C 303 nt0.08□□□□□ -2.4
CLP1Q08685 YGR146C-AYGR146C-A 162 nt0.07□□□□□ -2.4
CLP1Q08685 SOV1YMR066W 2697 nt0.07□□□□□ -2.4
CLP1Q08685 YDL007C-AYDL007C-A 258 nt0.06□□□□□ -2.4
CLP1Q08685 YLR466C-BYLR466C-B 117 nt0.05□□□□□ -2.4
CLP1Q08685 YBL053WYBL053W 375 nt0.05□□□□□ -2.4
CLP1Q08685 YNL067W-BYNL067W-B 141 nt0.05□□□□□ -2.4
CLP1Q08685 snR45snR45 172 nt0.04□□□□□ -2.4
CLP1Q08685 RPM2YML091C 3609 nt0.03□□□□□ -2.4
CLP1Q08685 YGR151CYGR151C 336 nt0.02□□□□□ -2.41
CLP1Q08685 snR128snR128 126 nt0.01□□□□□ -2.41
CLP1Q08685 snR69snR69 101 nt-0.01□□□□□ -2.41
CLP1Q08685 YNL337WYNL337W 255 nt-0.01□□□□□ -2.41
CLP1Q08685 PMP2YEL017C-A 132 nt-0.02□□□□□ -2.41
CLP1Q08685 YGR164WYGR164W 336 nt-0.02□□□□□ -2.41
CLP1Q08685 tQ(UUG)QtQ(UUG)Q 76 nt-0.02□□□□□ -2.41
CLP1Q08685 YJL077W-AYJL077W-A 87 nt-0.02□□□□□ -2.41
CLP1Q08685 YNL338WYNL338W 159 nt-0.02□□□□□ -2.41
CLP1Q08685 YPL060C-AYPL060C-A 3315 nt-0.03□□□□□ -2.41
CLP1Q08685 YNL205CYNL205C 423 nt-0.04□□□□□ -2.42
CLP1Q08685 RDS3YPR094W 324 nt-0.08□□□□□ -2.42
CLP1Q08685 SEC10YLR166C 2616 nt-0.09□□□□□ -2.42
CLP1Q08685 tD(GUC)QtD(GUC)Q 75 nt-0.1□□□□□ -2.43
CLP1Q08685 YBR178WYBR178W 375 nt-0.11□□□□□ -2.43
CLP1Q08685 Q0032Q0032 291 nt-0.12□□□□□ -2.43
CLP1Q08685 SOM1YEL059C-A 225 nt-0.13□□□□□ -2.43
CLP1Q08685 YGL007C-AYGL007C-A 87 nt-0.13□□□□□ -2.43
CLP1Q08685 YER090C-AYER090C-A 90 nt-0.14□□□□□ -2.43
CLP1Q08685 snR50snR50 90 nt-0.14□□□□□ -2.43
CLP1Q08685 YNL266WYNL266W 420 nt-0.15□□□□□ -2.43
CLP1Q08685 YLR286W-AYLR286W-A 135 nt-0.16□□□□□ -2.44
CLP1Q08685 YML100W-AYML100W-A 174 nt-0.16□□□□□ -2.44
CLP1Q08685 YCR095W-AYCR095W-A 159 nt-0.18□□□□□ -2.44
CLP1Q08685 TFB5YDR079C-A 219 nt-0.18□□□□□ -2.44
CLP1Q08685 SBH2YER019C-A 267 nt-0.18□□□□□ -2.44
CLP1Q08685 YDL159C-BYDL159C-B 177 nt-0.19□□□□□ -2.44
CLP1Q08685 YIL071W-AYIL071W-A 477 nt-0.2□□□□□ -2.44
CLP1Q08685 YBR196C-AYBR196C-A 150 nt-0.2□□□□□ -2.44
CLP1Q08685 YCL001W-BYCL001W-B 255 nt-0.23□□□□□ -2.45
CLP1Q08685 PAU9YBL108C-A 129 nt-0.24□□□□□ -2.45
CLP1Q08685 YOR225WYOR225W 330 nt-0.24□□□□□ -2.45
CLP1Q08685 YLR299C-AYLR299C-A 93 nt-0.25□□□□□ -2.45
CLP1Q08685 YJL113WYJL113W 4647 nt-0.26□□□□□ -2.45
CLP1Q08685 YLR294CYLR294C 330 nt-0.27□□□□□ -2.45
CLP1Q08685 snR67snR67 82 nt-0.29□□□□□ -2.46
CLP1Q08685 tA(UGC)QtA(UGC)Q 76 nt-0.3□□□□□ -2.46
CLP1Q08685 YML054C-AYML054C-A 159 nt-0.38□□□□□ -2.47
CLP1Q08685 SKI7YOR076C 2244 nt-0.39□□□□□ -2.47
CLP1Q08685 YHR180C-BYHR180C-B 105 nt-0.41□□□□□ -2.48
CLP1Q08685 YOL083C-AYOL083C-A 141 nt-0.42□□□□□ -2.48
CLP1Q08685 YBL071C-BYBL071C-B 99 nt-0.46□□□□□ -2.48
CLP1Q08685 YNL170WYNL170W 396 nt-0.46□□□□□ -2.48
CLP1Q08685 URB1YKL014C 5295 nt-0.49□□□□□ -2.49
CLP1Q08685 YAL037C-AYAL037C-A 93 nt-0.5□□□□□ -2.49
CLP1Q08685 snR81snR81 201 nt-0.52□□□□□ -2.49
CLP1Q08685 YOL164W-AYOL164W-A 183 nt-0.52□□□□□ -2.49
CLP1Q08685 ATP8Q0080 147 nt-0.53□□□□□ -2.49
CLP1Q08685 snR161snR161 161 nt-0.53□□□□□ -2.49
CLP1Q08685 YNL103W-AYNL103W-A 90 nt-0.55□□□□□ -2.5
CLP1Q08685 RPL41AYDL184C 78 nt-0.57□□□□□ -2.5
CLP1Q08685 YBR109W-AYBR109W-A 225 nt-0.57□□□□□ -2.5
CLP1Q08685 snR33snR33 183 nt-0.59□□□□□ -2.5
CLP1Q08685 snR47snR47 99 nt-0.59□□□□□ -2.5
CLP1Q08685 YBR296C-AYBR296C-A 120 nt-0.59□□□□□ -2.5
CLP1Q08685 YGL041C-BYGL041C-B 183 nt-0.6□□□□□ -2.51
CLP1Q08685 snR61snR61 90 nt-0.61□□□□□ -2.51
CLP1Q08685 YBL100W-CYBL100W-C 120 nt-0.61□□□□□ -2.51
CLP1Q08685 YGR240C-AYGR240C-A 201 nt-0.62□□□□□ -2.51
CLP1Q08685 YOR376W-AYOR376W-A 156 nt-0.65□□□□□ -2.51
CLP1Q08685 snR38snR38 95 nt-0.65□□□□□ -2.51
CLP1Q08685 Q0092Q0092 141 nt-0.67□□□□□ -2.52
CLP1Q08685 YKL106C-AYKL106C-A 120 nt-0.68□□□□□ -2.52
CLP1Q08685 YHL009W-BYHL009W-B 5409 nt-0.7□□□□□ -2.52
CLP1Q08685 tT(UGU)G1tT(UGU)G1 72 nt-0.7□□□□□ -2.52
CLP1Q08685 tT(UGU)G2tT(UGU)G2 72 nt-0.7□□□□□ -2.52
CLP1Q08685 tT(UGU)PtT(UGU)P 72 nt-0.7□□□□□ -2.52
CLP1Q08685 tS(GCU)Q1tS(GCU)Q1 86 nt-0.72□□□□□ -2.52
CLP1Q08685 YOR316C-AYOR316C-A 210 nt-0.77□□□□□ -2.53
CLP1Q08685 Q0143Q0143 153 nt-0.79□□□□□ -2.54
CLP1Q08685 YDR034C-AYDR034C-A 177 nt-0.8□□□□□ -2.54
CLP1Q08685 tP(UGG)QtP(UGG)Q 72 nt-0.8□□□□□ -2.54
CLP1Q08685 YKL225WYKL225W 348 nt-0.8□□□□□ -2.54
CLP1Q08685 snR77snR77 88 nt-0.81□□□□□ -2.54
CLP1Q08685 snR62snR62 100 nt-0.82□□□□□ -2.54
CLP1Q08685 CDC65tQ(CUG)M 72 nt-0.85□□□□□ -2.55
CLP1Q08685 YMR326CYMR326C 309 nt-0.92□□□□□ -2.56
CLP1Q08685 YMR315W-AYMR315W-A 108 nt-0.96□□□□□ -2.56
CLP1Q08685 YHR217CYHR217C 462 nt-0.97□□□□□ -2.56
CLP1Q08685 snR85snR85 171 nt-0.98□□□□□ -2.57
CLP1Q08685 snR64snR64 101 nt-1.02□□□□□ -2.57
Retrieved 100 of 7,029 protein–RNA pairs in 11.5 ms