Protein–RNA interactions for Protein: Q04007

SND1, SRP-independent targeting protein 1, yeastyeast

Predictions only

Length 877 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SND1Q04007 YMR160WYMR160W 2451 nt0.84□□□□□ -2.27
SND1Q04007 YBR178WYBR178W 375 nt0.84□□□□□ -2.27
SND1Q04007 YMR326CYMR326C 309 nt0.83□□□□□ -2.28
SND1Q04007 YPR159C-AYPR159C-A 102 nt0.83□□□□□ -2.28
SND1Q04007 YGL041C-BYGL041C-B 183 nt0.81□□□□□ -2.28
SND1Q04007 NNF2YGR089W 2811 nt0.8□□□□□ -2.28
SND1Q04007 YNL266WYNL266W 420 nt0.8□□□□□ -2.28
SND1Q04007 GLG1YKR058W 1851 nt0.79□□□□□ -2.28
SND1Q04007 THO2YNL139C 4794 nt0.79□□□□□ -2.28
SND1Q04007 YLL006W-AYLL006W-A 177 nt0.78□□□□□ -2.28
SND1Q04007 YOR192C-BYOR192C-B 5313 nt0.77□□□□□ -2.29
SND1Q04007 YHR217CYHR217C 462 nt0.77□□□□□ -2.29
SND1Q04007 PET111YMR257C 2403 nt0.77□□□□□ -2.29
SND1Q04007 ULP2YIL031W 3105 nt0.76□□□□□ -2.29
SND1Q04007 YOL014WYOL014W 375 nt0.76□□□□□ -2.29
SND1Q04007 MLP2YIL149C 5040 nt0.74□□□□□ -2.29
SND1Q04007 tT(AGU)BtT(AGU)B 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)CtT(AGU)C 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)DtT(AGU)D 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)HtT(AGU)H 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)I1tT(AGU)I1 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)I2tT(AGU)I2 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)JtT(AGU)J 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)N1tT(AGU)N1 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)N2tT(AGU)N2 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)O1tT(AGU)O1 73 nt0.73□□□□□ -2.29
SND1Q04007 tT(AGU)O2tT(AGU)O2 73 nt0.73□□□□□ -2.29
SND1Q04007 CSE1YGL238W 2883 nt0.73□□□□□ -2.29
SND1Q04007 SEC10YLR166C 2616 nt0.7□□□□□ -2.3
SND1Q04007 snR81snR81 201 nt0.7□□□□□ -2.3
SND1Q04007 SBH1YER087C-B 249 nt0.69□□□□□ -2.3
SND1Q04007 YBR196C-AYBR196C-A 150 nt0.69□□□□□ -2.3
SND1Q04007 NIP1YMR309C 2439 nt0.69□□□□□ -2.3
SND1Q04007 EST1YLR233C 2100 nt0.68□□□□□ -2.3
SND1Q04007 YOL083C-AYOL083C-A 141 nt0.67□□□□□ -2.3
SND1Q04007 BUL2YML111W 2763 nt0.67□□□□□ -2.3
SND1Q04007 FMP27YLR454W 7887 nt0.65□□□□□ -2.3
SND1Q04007 AI1Q0050 2505 nt0.65□□□□□ -2.31
SND1Q04007 YAL037C-AYAL037C-A 93 nt0.65□□□□□ -2.31
SND1Q04007 snR69snR69 101 nt0.64□□□□□ -2.31
SND1Q04007 tD(GUC)QtD(GUC)Q 75 nt0.64□□□□□ -2.31
SND1Q04007 YDR371C-AYDR371C-A 105 nt0.64□□□□□ -2.31
SND1Q04007 RPS26AYGL189C 360 nt0.64□□□□□ -2.31
SND1Q04007 YKL145W-AYKL145W-A 93 nt0.63□□□□□ -2.31
SND1Q04007 YMR272W-AYMR272W-A 114 nt0.63□□□□□ -2.31
SND1Q04007 tS(GCU)Q1tS(GCU)Q1 86 nt0.62□□□□□ -2.31
SND1Q04007 YLR286W-AYLR286W-A 135 nt0.62□□□□□ -2.31
SND1Q04007 YBL071C-BYBL071C-B 99 nt0.62□□□□□ -2.31
SND1Q04007 ORC3YLL004W 1851 nt0.61□□□□□ -2.31
SND1Q04007 YDL247W-AYDL247W-A 75 nt0.6□□□□□ -2.31
SND1Q04007 YNL054W-BYNL054W-B 5250 nt0.58□□□□□ -2.32
SND1Q04007 YPL060C-AYPL060C-A 3315 nt0.58□□□□□ -2.32
SND1Q04007 RDS3YPR094W 324 nt0.57□□□□□ -2.32
SND1Q04007 UTP10YJL109C 5310 nt0.56□□□□□ -2.32
SND1Q04007 YDL159C-BYDL159C-B 177 nt0.55□□□□□ -2.32
SND1Q04007 tQ(UUG)QtQ(UUG)Q 76 nt0.54□□□□□ -2.32
SND1Q04007 YJL077W-AYJL077W-A 87 nt0.53□□□□□ -2.32
SND1Q04007 YLR299C-AYLR299C-A 93 nt0.53□□□□□ -2.32
SND1Q04007 YOL164W-AYOL164W-A 183 nt0.53□□□□□ -2.32
SND1Q04007 YLL066W-BYLL066W-B 171 nt0.49□□□□□ -2.33
SND1Q04007 snR45snR45 172 nt0.49□□□□□ -2.33
SND1Q04007 YBL100W-BYBL100W-B 5313 nt0.48□□□□□ -2.33
SND1Q04007 snR62snR62 100 nt0.48□□□□□ -2.33
SND1Q04007 YOR186C-AYOR186C-A 210 nt0.48□□□□□ -2.33
SND1Q04007 YGR240C-AYGR240C-A 201 nt0.46□□□□□ -2.34
SND1Q04007 YBL100W-CYBL100W-C 120 nt0.46□□□□□ -2.34
SND1Q04007 snR47snR47 99 nt0.45□□□□□ -2.34
SND1Q04007 snR50snR50 90 nt0.45□□□□□ -2.34
SND1Q04007 YDR034C-AYDR034C-A 177 nt0.43□□□□□ -2.34
SND1Q04007 YER090C-AYER090C-A 90 nt0.42□□□□□ -2.34
SND1Q04007 YML054C-AYML054C-A 159 nt0.42□□□□□ -2.34
SND1Q04007 YER078W-AYER078W-A 165 nt0.4□□□□□ -2.35
SND1Q04007 YHR180C-BYHR180C-B 105 nt0.39□□□□□ -2.35
SND1Q04007 ESP1YGR098C 4893 nt0.35□□□□□ -2.35
SND1Q04007 YOL013W-AYOL013W-A 192 nt0.34□□□□□ -2.36
SND1Q04007 YBR109W-AYBR109W-A 225 nt0.32□□□□□ -2.36
SND1Q04007 RPL41AYDL184C 78 nt0.29□□□□□ -2.36
SND1Q04007 SOV1YMR066W 2697 nt0.27□□□□□ -2.37
SND1Q04007 snR67snR67 82 nt0.27□□□□□ -2.37
SND1Q04007 snR38snR38 95 nt0.25□□□□□ -2.37
SND1Q04007 YBR296C-AYBR296C-A 120 nt0.25□□□□□ -2.37
SND1Q04007 YKL225WYKL225W 348 nt0.23□□□□□ -2.37
SND1Q04007 YML100W-AYML100W-A 174 nt0.2□□□□□ -2.38
SND1Q04007 snR128snR128 126 nt0.18□□□□□ -2.38
SND1Q04007 snR64snR64 101 nt0.17□□□□□ -2.38
SND1Q04007 SKI7YOR076C 2244 nt0.14□□□□□ -2.39
SND1Q04007 PAU9YBL108C-A 129 nt0.06□□□□□ -2.4
SND1Q04007 YDL159W-AYDL159W-A 132 nt0.05□□□□□ -2.4
SND1Q04007 snR53snR53 91 nt0.05□□□□□ -2.4
SND1Q04007 YKL106C-AYKL106C-A 120 nt-0.01□□□□□ -2.41
SND1Q04007 YGR122C-AYGR122C-A 129 nt-0.05□□□□□ -2.42
SND1Q04007 YOR376W-AYOR376W-A 156 nt-0.07□□□□□ -2.42
SND1Q04007 tA(UGC)QtA(UGC)Q 76 nt-0.08□□□□□ -2.42
SND1Q04007 SBH2YER019C-A 267 nt-0.12□□□□□ -2.43
SND1Q04007 YLR149C-AYLR149C-A 87 nt-0.2□□□□□ -2.44
SND1Q04007 YOR316C-AYOR316C-A 210 nt-0.21□□□□□ -2.44
SND1Q04007 YJL113WYJL113W 4647 nt-0.21□□□□□ -2.44
SND1Q04007 YDL114W-AYDL114W-A 114 nt-0.22□□□□□ -2.44
SND1Q04007 snR161snR161 161 nt-0.22□□□□□ -2.44
SND1Q04007 tV(UAC)QtV(UAC)Q 76 nt-0.27□□□□□ -2.45
Retrieved 100 of 7,029 protein–RNA pairs in 101.7 ms