Protein–RNA interactions for Protein: P38854

TDA11, Topoisomerase I damage affected protein 11, yeastyeast

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDA11P38854 YDL007C-AYDL007C-A 258 nt-0.57□□□□□ -2.5
TDA11P38854 YJL077W-AYJL077W-A 87 nt-0.58□□□□□ -2.5
TDA11P38854 YOR302WYOR302W 78 nt-0.58□□□□□ -2.5
TDA11P38854 YOL155W-AYOL155W-A 135 nt-0.62□□□□□ -2.51
TDA11P38854 YHL009W-BYHL009W-B 5409 nt-0.62□□□□□ -2.51
TDA11P38854 YNL067W-BYNL067W-B 141 nt-0.64□□□□□ -2.51
TDA11P38854 snR69snR69 101 nt-0.65□□□□□ -2.51
TDA11P38854 tA(UGC)QtA(UGC)Q 76 nt-0.67□□□□□ -2.52
TDA11P38854 YOR231C-AYOR231C-A 201 nt-0.67□□□□□ -2.52
TDA11P38854 YIL071W-AYIL071W-A 477 nt-0.68□□□□□ -2.52
TDA11P38854 YGR146C-AYGR146C-A 162 nt-0.69□□□□□ -2.52
TDA11P38854 YNR077CYNR077C 255 nt-0.69□□□□□ -2.52
TDA11P38854 snR39BsnR39B 96 nt-0.69□□□□□ -2.52
TDA11P38854 YDR524W-CYDR524W-C 90 nt-0.7□□□□□ -2.52
TDA11P38854 tT(UGU)G1tT(UGU)G1 72 nt-0.7□□□□□ -2.52
TDA11P38854 tT(UGU)G2tT(UGU)G2 72 nt-0.7□□□□□ -2.52
TDA11P38854 tT(UGU)PtT(UGU)P 72 nt-0.7□□□□□ -2.52
TDA11P38854 snR33snR33 183 nt-0.7□□□□□ -2.52
TDA11P38854 tM(CAU)Q2tM(CAU)Q2 78 nt-0.71□□□□□ -2.52
TDA11P38854 YOR329W-AYOR329W-A 210 nt-0.74□□□□□ -2.53
TDA11P38854 PMP2YEL017C-A 132 nt-0.76□□□□□ -2.53
TDA11P38854 YGL188C-AYGL188C-A 141 nt-0.76□□□□□ -2.53
TDA11P38854 YER090C-AYER090C-A 90 nt-0.77□□□□□ -2.53
TDA11P38854 tQ(UUG)QtQ(UUG)Q 76 nt-0.77□□□□□ -2.53
TDA11P38854 snR161snR161 161 nt-0.78□□□□□ -2.53
TDA11P38854 RDS3YPR094W 324 nt-0.79□□□□□ -2.54
TDA11P38854 snR48snR48 113 nt-0.79□□□□□ -2.54
TDA11P38854 YNL266WYNL266W 420 nt-0.8□□□□□ -2.54
TDA11P38854 snR80snR80 171 nt-0.82□□□□□ -2.54
TDA11P38854 YBR223W-AYBR223W-A 120 nt-0.85□□□□□ -2.55
TDA11P38854 snR50snR50 90 nt-0.85□□□□□ -2.55
TDA11P38854 JLP2YMR132C 627 nt-0.86□□□□□ -2.55
TDA11P38854 PAU9YBL108C-A 129 nt-0.86□□□□□ -2.55
TDA11P38854 tL(UAA)QtL(UAA)Q 85 nt-0.89□□□□□ -2.55
TDA11P38854 tD(GUC)QtD(GUC)Q 75 nt-0.93□□□□□ -2.56
TDA11P38854 snR52snR52 92 nt-0.95□□□□□ -2.56
TDA11P38854 YNL205CYNL205C 423 nt-0.96□□□□□ -2.56
TDA11P38854 YLR342W-AYLR342W-A 174 nt-0.99□□□□□ -2.57
TDA11P38854 YLR286W-AYLR286W-A 135 nt-1□□□□□ -2.57
TDA11P38854 YBR178WYBR178W 375 nt-1.03□□□□□ -2.57
TDA11P38854 snR67snR67 82 nt-1.05□□□□□ -2.58
TDA11P38854 SKI7YOR076C 2244 nt-1.07□□□□□ -2.58
TDA11P38854 YDL159C-BYDL159C-B 177 nt-1.08□□□□□ -2.58
TDA11P38854 tP(UGG)QtP(UGG)Q 72 nt-1.08□□□□□ -2.58
TDA11P38854 YOR102WYOR102W 351 nt-1.08□□□□□ -2.58
TDA11P38854 YHL015W-AYHL015W-A 84 nt-1.1□□□□□ -2.59
TDA11P38854 Q0142Q0142 177 nt-1.16□□□□□ -2.6
TDA11P38854 YDR406W-AYDR406W-A 246 nt-1.21□□□□□ -2.6
TDA11P38854 YJL150WYJL150W 303 nt-1.21□□□□□ -2.6
TDA11P38854 YNL198CYNL198C 303 nt-1.21□□□□□ -2.6
TDA11P38854 YLR299C-AYLR299C-A 93 nt-1.24□□□□□ -2.61
TDA11P38854 YBR196C-AYBR196C-A 150 nt-1.24□□□□□ -2.61
TDA11P38854 YBL053WYBL053W 375 nt-1.27□□□□□ -2.61
TDA11P38854 tY(GUA)QtY(GUA)Q 84 nt-1.35□□□□□ -2.63
TDA11P38854 YML054C-AYML054C-A 159 nt-1.36□□□□□ -2.63
TDA11P38854 YMR046W-AYMR046W-A 129 nt-1.37□□□□□ -2.63
TDA11P38854 SOM1YEL059C-A 225 nt-1.43□□□□□ -2.64
TDA11P38854 YCR095W-AYCR095W-A 159 nt-1.49□□□□□ -2.65
TDA11P38854 SPG3YDR504C 384 nt-1.49□□□□□ -2.65
TDA11P38854 CDC65tQ(CUG)M 72 nt-1.5□□□□□ -2.65
TDA11P38854 snR77snR77 88 nt-1.56□□□□□ -2.66
TDA11P38854 YOR376W-AYOR376W-A 156 nt-1.56□□□□□ -2.66
TDA11P38854 YHR180C-BYHR180C-B 105 nt-1.57□□□□□ -2.66
TDA11P38854 YGR240C-AYGR240C-A 201 nt-1.58□□□□□ -2.66
TDA11P38854 snR81snR81 201 nt-1.6□□□□□ -2.67
TDA11P38854 tM(CAU)Q1tM(CAU)Q1 76 nt-1.61□□□□□ -2.67
TDA11P38854 YMR315W-AYMR315W-A 108 nt-1.63□□□□□ -2.67
TDA11P38854 YOL166W-AYOL166W-A 156 nt-1.72□□□□□ -2.68
TDA11P38854 YLR466C-BYLR466C-B 117 nt-1.74□□□□□ -2.69
TDA11P38854 YBR109W-AYBR109W-A 225 nt-1.74□□□□□ -2.69
TDA11P38854 YGR151CYGR151C 336 nt-1.75□□□□□ -2.69
TDA11P38854 YOR316C-AYOR316C-A 210 nt-1.76□□□□□ -2.69
TDA11P38854 YBL071C-BYBL071C-B 99 nt-1.78□□□□□ -2.69
TDA11P38854 YKL106C-AYKL106C-A 120 nt-1.8□□□□□ -2.7
TDA11P38854 YCL001W-BYCL001W-B 255 nt-1.8□□□□□ -2.7
TDA11P38854 YBR126W-BYBR126W-B 144 nt-1.81□□□□□ -2.7
TDA11P38854 YBR296C-AYBR296C-A 120 nt-1.81□□□□□ -2.7
TDA11P38854 snR38snR38 95 nt-1.82□□□□□ -2.7
TDA11P38854 YOL083C-AYOL083C-A 141 nt-1.83□□□□□ -2.7
TDA11P38854 RPL41AYDL184C 78 nt-1.86□□□□□ -2.71
TDA11P38854 YOR309CYOR309C 381 nt-1.88□□□□□ -2.71
TDA11P38854 YAL037C-AYAL037C-A 93 nt-1.9□□□□□ -2.71
TDA11P38854 YOL164W-AYOL164W-A 183 nt-1.9□□□□□ -2.71
TDA11P38854 YNL338WYNL338W 159 nt-1.91□□□□□ -2.72
TDA11P38854 YDR543CYDR543C 300 nt-2□□□□□ -2.73
TDA11P38854 snR47snR47 99 nt-2.06□□□□□ -2.74
TDA11P38854 YNL337WYNL337W 255 nt-2.09□□□□□ -2.74
TDA11P38854 Q0032Q0032 291 nt-2.15□□□□□ -2.75
TDA11P38854 YBL100W-CYBL100W-C 120 nt-2.16□□□□□ -2.76
TDA11P38854 YGL007C-AYGL007C-A 87 nt-2.21□□□□□ -2.76
TDA11P38854 snR6snR6 112 nt-2.29□□□□□ -2.78
TDA11P38854 tS(GCU)Q1tS(GCU)Q1 86 nt-2.29□□□□□ -2.78
TDA11P38854 YKL225WYKL225W 348 nt-2.3□□□□□ -2.78
TDA11P38854 YGL041C-BYGL041C-B 183 nt-2.41□□□□□ -2.8
TDA11P38854 tV(UAC)QtV(UAC)Q 76 nt-2.43□□□□□ -2.8
TDA11P38854 snR61snR61 90 nt-2.44□□□□□ -2.8
TDA11P38854 YNL103W-AYNL103W-A 90 nt-2.44□□□□□ -2.8
TDA11P38854 YOR335W-AYOR335W-A 81 nt-2.47□□□□□ -2.8
TDA11P38854 snR73snR73 106 nt-2.48□□□□□ -2.81
TDA11P38854 YDL114W-AYDL114W-A 114 nt-2.52□□□□□ -2.81
Retrieved 100 of 7,029 protein–RNA pairs in 20.1 ms