Protein–RNA interactions for Protein: P38779

CIC1, Proteasome-interacting protein CIC1, yeastyeast

Known RBP Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CIC1P38779 BUD3YCL014W 4911 nt1.19□□□□□ -2.22
CIC1P38779 tD(GUC)QtD(GUC)Q 75 nt1.19□□□□□ -2.22
CIC1P38779 snR62snR62 100 nt1.18□□□□□ -2.22
CIC1P38779 YLR286W-AYLR286W-A 135 nt1.18□□□□□ -2.22
CIC1P38779 HUG1YML058W-A 207 nt1.18□□□□□ -2.22
CIC1P38779 snR69snR69 101 nt1.17□□□□□ -2.22
CIC1P38779 NIP1YMR309C 2439 nt1.16□□□□□ -2.22
CIC1P38779 YOL164W-AYOL164W-A 183 nt1.13□□□□□ -2.23
CIC1P38779 YOR192C-BYOR192C-B 5313 nt1.12□□□□□ -2.23
CIC1P38779 DOP1YDR141C 5097 nt1.12□□□□□ -2.23
CIC1P38779 RDS3YPR094W 324 nt1.09□□□□□ -2.23
CIC1P38779 YJR029WYJR029W 5268 nt1.07□□□□□ -2.24
CIC1P38779 YPR137C-BYPR137C-B 5268 nt1.07□□□□□ -2.24
CIC1P38779 YJL077W-AYJL077W-A 87 nt1.07□□□□□ -2.24
CIC1P38779 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
CIC1P38779 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
CIC1P38779 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
CIC1P38779 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
CIC1P38779 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
CIC1P38779 LTE1YAL024C 4308 nt1.05□□□□□ -2.24
CIC1P38779 YLR299C-AYLR299C-A 93 nt1.05□□□□□ -2.24
CIC1P38779 YBL100W-CYBL100W-C 120 nt1.05□□□□□ -2.24
CIC1P38779 YDL159C-BYDL159C-B 177 nt1.04□□□□□ -2.24
CIC1P38779 PAU24YBR301W 363 nt1.04□□□□□ -2.24
CIC1P38779 YDR371C-AYDR371C-A 105 nt1.03□□□□□ -2.24
CIC1P38779 YGR240C-AYGR240C-A 201 nt1.03□□□□□ -2.24
CIC1P38779 PAU12YGR294W 363 nt1.02□□□□□ -2.25
CIC1P38779 PET111YMR257C 2403 nt1.01□□□□□ -2.25
CIC1P38779 YDR034C-AYDR034C-A 177 nt1□□□□□ -2.25
CIC1P38779 YNL054W-BYNL054W-B 5250 nt0.99□□□□□ -2.25
CIC1P38779 MYO1YHR023W 5787 nt0.97□□□□□ -2.25
CIC1P38779 ORC3YLL004W 1851 nt0.95□□□□□ -2.26
CIC1P38779 snR47snR47 99 nt0.95□□□□□ -2.26
CIC1P38779 tQ(UUG)QtQ(UUG)Q 76 nt0.93□□□□□ -2.26
CIC1P38779 YBL100W-BYBL100W-B 5313 nt0.9□□□□□ -2.27
CIC1P38779 MLP1YKR095W 5628 nt0.85□□□□□ -2.27
CIC1P38779 YER090C-AYER090C-A 90 nt0.84□□□□□ -2.27
CIC1P38779 YML054C-AYML054C-A 159 nt0.83□□□□□ -2.28
CIC1P38779 tT(AGU)BtT(AGU)B 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)CtT(AGU)C 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)DtT(AGU)D 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)HtT(AGU)H 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)I1tT(AGU)I1 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)I2tT(AGU)I2 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)JtT(AGU)J 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)N1tT(AGU)N1 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)N2tT(AGU)N2 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)O1tT(AGU)O1 73 nt0.81□□□□□ -2.28
CIC1P38779 tT(AGU)O2tT(AGU)O2 73 nt0.81□□□□□ -2.28
CIC1P38779 YHR180C-BYHR180C-B 105 nt0.8□□□□□ -2.28
CIC1P38779 IQG1YPL242C 4488 nt0.79□□□□□ -2.28
CIC1P38779 snR50snR50 90 nt0.78□□□□□ -2.28
CIC1P38779 YBR109W-AYBR109W-A 225 nt0.76□□□□□ -2.29
CIC1P38779 YPR159C-AYPR159C-A 102 nt0.74□□□□□ -2.29
CIC1P38779 RPL41AYDL184C 78 nt0.7□□□□□ -2.3
CIC1P38779 YMR272W-AYMR272W-A 114 nt0.7□□□□□ -2.3
CIC1P38779 YMR160WYMR160W 2451 nt0.69□□□□□ -2.3
CIC1P38779 YKL225WYKL225W 348 nt0.68□□□□□ -2.3
CIC1P38779 UTP10YJL109C 5310 nt0.67□□□□□ -2.3
CIC1P38779 snR38snR38 95 nt0.66□□□□□ -2.3
CIC1P38779 YBR296C-AYBR296C-A 120 nt0.66□□□□□ -2.3
CIC1P38779 AI1Q0050 2505 nt0.66□□□□□ -2.3
CIC1P38779 snR64snR64 101 nt0.65□□□□□ -2.31
CIC1P38779 YOR186C-AYOR186C-A 210 nt0.64□□□□□ -2.31
CIC1P38779 snR67snR67 82 nt0.6□□□□□ -2.31
CIC1P38779 tF(GAA)BtF(GAA)B 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)FtF(GAA)F 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)GtF(GAA)G 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)H1tF(GAA)H1 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)H2tF(GAA)H2 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)MtF(GAA)M 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)P1tF(GAA)P1 73 nt0.59□□□□□ -2.31
CIC1P38779 tF(GAA)P2tF(GAA)P2 73 nt0.59□□□□□ -2.31
CIC1P38779 snR53snR53 91 nt0.59□□□□□ -2.31
CIC1P38779 ESP1YGR098C 4893 nt0.54□□□□□ -2.32
CIC1P38779 MLP2YIL149C 5040 nt0.53□□□□□ -2.32
CIC1P38779 YKL145W-AYKL145W-A 93 nt0.53□□□□□ -2.32
CIC1P38779 SOV1YMR066W 2697 nt0.52□□□□□ -2.33
CIC1P38779 FMP27YLR454W 7887 nt0.51□□□□□ -2.33
CIC1P38779 UTP20YBL004W 7482 nt0.47□□□□□ -2.33
CIC1P38779 YML100W-AYML100W-A 174 nt0.46□□□□□ -2.34
CIC1P38779 YOL014WYOL014W 375 nt0.42□□□□□ -2.34
CIC1P38779 YOL013W-AYOL013W-A 192 nt0.37□□□□□ -2.35
CIC1P38779 SKI7YOR076C 2244 nt0.37□□□□□ -2.35
CIC1P38779 YDL159W-AYDL159W-A 132 nt0.34□□□□□ -2.36
CIC1P38779 THO2YNL139C 4794 nt0.32□□□□□ -2.36
CIC1P38779 snR128snR128 126 nt0.31□□□□□ -2.36
CIC1P38779 YGR122C-AYGR122C-A 129 nt0.22□□□□□ -2.37
CIC1P38779 YKL106C-AYKL106C-A 120 nt0.19□□□□□ -2.38
CIC1P38779 YLR149C-AYLR149C-A 87 nt0.14□□□□□ -2.39
CIC1P38779 YER078W-AYER078W-A 165 nt0.11□□□□□ -2.39
CIC1P38779 PAU9YBL108C-A 129 nt0.08□□□□□ -2.4
CIC1P38779 YOR376W-AYOR376W-A 156 nt0.06□□□□□ -2.4
CIC1P38779 tA(UGC)QtA(UGC)Q 76 nt-0.01□□□□□ -2.41
CIC1P38779 YOR316C-AYOR316C-A 210 nt-0.06□□□□□ -2.42
CIC1P38779 YDL114W-AYDL114W-A 114 nt-0.07□□□□□ -2.42
CIC1P38779 tV(UAC)QtV(UAC)Q 76 nt-0.1□□□□□ -2.43
CIC1P38779 YKL096C-BYKL096C-B 150 nt-0.11□□□□□ -2.43
CIC1P38779 SBH2YER019C-A 267 nt-0.15□□□□□ -2.43
CIC1P38779 snR77snR77 88 nt-0.24□□□□□ -2.45
Retrieved 100 of 7,029 protein–RNA pairs in 69.2 ms