Protein–RNA interactions for Protein: P38319

TDP1, Tyrosyl-DNA phosphodiesterase 1, yeastyeast

Predictions only

Length 544 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDP1P38319 CSE1YGL238W 2883 nt1.09□□□□□ -2.24
TDP1P38319 VAM6YDL077C 3150 nt1.08□□□□□ -2.24
TDP1P38319 YLR299C-AYLR299C-A 93 nt1.08□□□□□ -2.24
TDP1P38319 snR53snR53 91 nt1.07□□□□□ -2.24
TDP1P38319 SPT7YBR081C 3999 nt1.06□□□□□ -2.24
TDP1P38319 SCC2YDR180W 4482 nt1.05□□□□□ -2.24
TDP1P38319 YDL159C-BYDL159C-B 177 nt1.05□□□□□ -2.24
TDP1P38319 NST1YNL091W 3723 nt1.04□□□□□ -2.24
TDP1P38319 tV(UAC)BtV(UAC)B 74 nt1.04□□□□□ -2.24
TDP1P38319 tV(UAC)DtV(UAC)D 74 nt1.04□□□□□ -2.24
TDP1P38319 YLL006W-AYLL006W-A 177 nt1.04□□□□□ -2.24
TDP1P38319 BEM2YER155C 6504 nt1.04□□□□□ -2.24
TDP1P38319 snR64snR64 101 nt1.03□□□□□ -2.24
TDP1P38319 RDS3YPR094W 324 nt1.03□□□□□ -2.24
TDP1P38319 SIP4YJL089W 2490 nt1.03□□□□□ -2.25
TDP1P38319 NIP1YMR309C 2439 nt1.01□□□□□ -2.25
TDP1P38319 BUL2YML111W 2763 nt0.98□□□□□ -2.25
TDP1P38319 DOP1YDR141C 5097 nt0.98□□□□□ -2.25
TDP1P38319 RKR1YMR247C 4689 nt0.97□□□□□ -2.25
TDP1P38319 PAU12YGR294W 363 nt0.97□□□□□ -2.25
TDP1P38319 YJL077W-AYJL077W-A 87 nt0.97□□□□□ -2.25
TDP1P38319 YKL225WYKL225W 348 nt0.96□□□□□ -2.26
TDP1P38319 EMT1tM(CAU)D 73 nt0.95□□□□□ -2.26
TDP1P38319 EMT5tM(CAU)J1 73 nt0.95□□□□□ -2.26
TDP1P38319 EMT3tM(CAU)J2 73 nt0.95□□□□□ -2.26
TDP1P38319 EMT4tM(CAU)M 73 nt0.95□□□□□ -2.26
TDP1P38319 EMT2tM(CAU)O2 73 nt0.95□□□□□ -2.26
TDP1P38319 YML054C-AYML054C-A 159 nt0.95□□□□□ -2.26
TDP1P38319 YHR180C-BYHR180C-B 105 nt0.94□□□□□ -2.26
TDP1P38319 YBR109W-AYBR109W-A 225 nt0.93□□□□□ -2.26
TDP1P38319 YPR117WYPR117W 7470 nt0.93□□□□□ -2.26
TDP1P38319 BUD3YCL014W 4911 nt0.91□□□□□ -2.26
TDP1P38319 RPL41AYDL184C 78 nt0.9□□□□□ -2.27
TDP1P38319 tQ(UUG)QtQ(UUG)Q 76 nt0.9□□□□□ -2.27
TDP1P38319 snR50snR50 90 nt0.9□□□□□ -2.27
TDP1P38319 YOR192C-BYOR192C-B 5313 nt0.89□□□□□ -2.27
TDP1P38319 YNL054W-BYNL054W-B 5250 nt0.89□□□□□ -2.27
TDP1P38319 MYO1YHR023W 5787 nt0.88□□□□□ -2.27
TDP1P38319 snR38snR38 95 nt0.88□□□□□ -2.27
TDP1P38319 PAU24YBR301W 363 nt0.88□□□□□ -2.27
TDP1P38319 YBR296C-AYBR296C-A 120 nt0.87□□□□□ -2.27
TDP1P38319 YER090C-AYER090C-A 90 nt0.83□□□□□ -2.28
TDP1P38319 AI1Q0050 2505 nt0.83□□□□□ -2.28
TDP1P38319 YDR371C-AYDR371C-A 105 nt0.82□□□□□ -2.28
TDP1P38319 PET111YMR257C 2403 nt0.78□□□□□ -2.28
TDP1P38319 YDL159W-AYDL159W-A 132 nt0.77□□□□□ -2.29
TDP1P38319 LTE1YAL024C 4308 nt0.75□□□□□ -2.29
TDP1P38319 SKI7YOR076C 2244 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)BtF(GAA)B 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)FtF(GAA)F 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)GtF(GAA)G 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)H1tF(GAA)H1 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)H2tF(GAA)H2 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)MtF(GAA)M 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)P1tF(GAA)P1 73 nt0.74□□□□□ -2.29
TDP1P38319 tF(GAA)P2tF(GAA)P2 73 nt0.74□□□□□ -2.29
TDP1P38319 YLR149C-AYLR149C-A 87 nt0.72□□□□□ -2.29
TDP1P38319 UTP20YBL004W 7482 nt0.71□□□□□ -2.3
TDP1P38319 YBL100W-BYBL100W-B 5313 nt0.71□□□□□ -2.3
TDP1P38319 snR67snR67 82 nt0.68□□□□□ -2.3
TDP1P38319 YPR159C-AYPR159C-A 102 nt0.68□□□□□ -2.3
TDP1P38319 YGR122C-AYGR122C-A 129 nt0.67□□□□□ -2.3
TDP1P38319 YMR272W-AYMR272W-A 114 nt0.67□□□□□ -2.3
TDP1P38319 YMR160WYMR160W 2451 nt0.67□□□□□ -2.3
TDP1P38319 tT(AGU)BtT(AGU)B 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)CtT(AGU)C 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)DtT(AGU)D 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)HtT(AGU)H 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)I1tT(AGU)I1 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)I2tT(AGU)I2 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)JtT(AGU)J 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)N1tT(AGU)N1 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)N2tT(AGU)N2 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)O1tT(AGU)O1 73 nt0.66□□□□□ -2.3
TDP1P38319 tT(AGU)O2tT(AGU)O2 73 nt0.66□□□□□ -2.3
TDP1P38319 MLP1YKR095W 5628 nt0.64□□□□□ -2.31
TDP1P38319 YKL096C-BYKL096C-B 150 nt0.63□□□□□ -2.31
TDP1P38319 UTP10YJL109C 5310 nt0.62□□□□□ -2.31
TDP1P38319 YOL014WYOL014W 375 nt0.59□□□□□ -2.31
TDP1P38319 YKL145W-AYKL145W-A 93 nt0.55□□□□□ -2.32
TDP1P38319 MLP2YIL149C 5040 nt0.54□□□□□ -2.32
TDP1P38319 IQG1YPL242C 4488 nt0.53□□□□□ -2.32
TDP1P38319 FMP27YLR454W 7887 nt0.53□□□□□ -2.32
TDP1P38319 YOR186C-AYOR186C-A 210 nt0.53□□□□□ -2.32
TDP1P38319 YKL106C-AYKL106C-A 120 nt0.47□□□□□ -2.33
TDP1P38319 YML100W-AYML100W-A 174 nt0.47□□□□□ -2.33
TDP1P38319 snR75snR75 89 nt0.45□□□□□ -2.34
TDP1P38319 YER078W-AYER078W-A 165 nt0.43□□□□□ -2.34
TDP1P38319 SOV1YMR066W 2697 nt0.42□□□□□ -2.34
TDP1P38319 ESP1YGR098C 4893 nt0.39□□□□□ -2.35
TDP1P38319 YDL114W-AYDL114W-A 114 nt0.39□□□□□ -2.35
TDP1P38319 tV(UAC)QtV(UAC)Q 76 nt0.34□□□□□ -2.36
TDP1P38319 YOR376W-AYOR376W-A 156 nt0.33□□□□□ -2.36
TDP1P38319 THO2YNL139C 4794 nt0.31□□□□□ -2.36
TDP1P38319 snR128snR128 126 nt0.29□□□□□ -2.36
TDP1P38319 YOL013W-AYOL013W-A 192 nt0.28□□□□□ -2.36
TDP1P38319 YOR316C-AYOR316C-A 210 nt0.25□□□□□ -2.37
TDP1P38319 PAU9YBL108C-A 129 nt0.23□□□□□ -2.37
TDP1P38319 snR77snR77 88 nt0.18□□□□□ -2.38
TDP1P38319 SBH2YER019C-A 267 nt0.18□□□□□ -2.38
Retrieved 100 of 7,029 protein–RNA pairs in 13.1 ms