Protein–RNA interactions for Protein: P25339

PUF4, Pumilio homology domain family member 4, yeastyeast

Known RBP RIP-Chip data

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PUF4P25339 tF(GAA)H1tF(GAA)H1 73 nt1.34□□□□□ -2.19
PUF4P25339 tF(GAA)H2tF(GAA)H2 73 nt1.34□□□□□ -2.19
PUF4P25339 tF(GAA)MtF(GAA)M 73 nt1.34□□□□□ -2.19
PUF4P25339 tF(GAA)P1tF(GAA)P1 73 nt1.34□□□□□ -2.19
PUF4P25339 tF(GAA)P2tF(GAA)P2 73 nt1.34□□□□□ -2.19
PUF4P25339 tV(UAC)BtV(UAC)B 74 nt1.34□□□□□ -2.19
PUF4P25339 tV(UAC)DtV(UAC)D 74 nt1.34□□□□□ -2.19
PUF4P25339 NST1YNL091W 3723 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)E1tH(GUG)E1 72 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)E2tH(GUG)E2 72 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)G1tH(GUG)G1 72 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)G2tH(GUG)G2 72 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)HtH(GUG)H 72 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)KtH(GUG)K 72 nt1.32□□□□□ -2.2
PUF4P25339 tH(GUG)MtH(GUG)M 72 nt1.32□□□□□ -2.2
PUF4P25339 snR64snR64 101 nt1.31□□□□□ -2.2
PUF4P25339 snR69snR69 101 nt1.3□□□□□ -2.2
PUF4P25339 BUD3YCL014W 4911 nt1.29□□□□□ -2.2
PUF4P25339 CSE1YGL238W 2883 nt1.29□□□□□ -2.2
PUF4P25339 YLR299C-AYLR299C-A 93 nt1.28□□□□□ -2.2
PUF4P25339 SPT7YBR081C 3999 nt1.25□□□□□ -2.21
PUF4P25339 YDL159C-BYDL159C-B 177 nt1.25□□□□□ -2.21
PUF4P25339 YKL225WYKL225W 348 nt1.21□□□□□ -2.22
PUF4P25339 RDS3YPR094W 324 nt1.21□□□□□ -2.22 RIP-Chip
PUF4P25339 YNL054W-BYNL054W-B 5250 nt1.21□□□□□ -2.22
PUF4P25339 BEM2YER155C 6504 nt1.21□□□□□ -2.22
PUF4P25339 YLL006W-AYLL006W-A 177 nt1.2□□□□□ -2.22
PUF4P25339 SIP4YJL089W 2490 nt1.19□□□□□ -2.22
PUF4P25339 YBR109W-AYBR109W-A 225 nt1.19□□□□□ -2.22
PUF4P25339 NIP1YMR309C 2439 nt1.19□□□□□ -2.22 RIP-Chip
PUF4P25339 BUL2YML111W 2763 nt1.19□□□□□ -2.22
PUF4P25339 SCC2YDR180W 4482 nt1.18□□□□□ -2.22
PUF4P25339 YML054C-AYML054C-A 159 nt1.18□□□□□ -2.22
PUF4P25339 RKR1YMR247C 4689 nt1.18□□□□□ -2.22
PUF4P25339 LTE1YAL024C 4308 nt1.17□□□□□ -2.22
PUF4P25339 VAM6YDL077C 3150 nt1.17□□□□□ -2.22 RIP-Chip
PUF4P25339 YOL014WYOL014W 375 nt1.16□□□□□ -2.22
PUF4P25339 snR38snR38 95 nt1.16□□□□□ -2.22
PUF4P25339 YDR371C-AYDR371C-A 105 nt1.15□□□□□ -2.23
PUF4P25339 snR50snR50 90 nt1.15□□□□□ -2.23
PUF4P25339 YHR180C-BYHR180C-B 105 nt1.12□□□□□ -2.23
PUF4P25339 YJR029WYJR029W 5268 nt1.1□□□□□ -2.23
PUF4P25339 YPR137C-BYPR137C-B 5268 nt1.1□□□□□ -2.23
PUF4P25339 YJL077W-AYJL077W-A 87 nt1.1□□□□□ -2.23
PUF4P25339 AI1Q0050 2505 nt1.1□□□□□ -2.23
PUF4P25339 RPL41AYDL184C 78 nt1.09□□□□□ -2.23
PUF4P25339 YBR296C-AYBR296C-A 120 nt1.07□□□□□ -2.24
PUF4P25339 YOR192C-BYOR192C-B 5313 nt1.07□□□□□ -2.24
PUF4P25339 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
PUF4P25339 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
PUF4P25339 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
PUF4P25339 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
PUF4P25339 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
PUF4P25339 YDL159W-AYDL159W-A 132 nt1.05□□□□□ -2.24
PUF4P25339 tQ(UUG)QtQ(UUG)Q 76 nt1.04□□□□□ -2.24
PUF4P25339 YLR149C-AYLR149C-A 87 nt1.01□□□□□ -2.25
PUF4P25339 YMR160WYMR160W 2451 nt1.01□□□□□ -2.25
PUF4P25339 YER090C-AYER090C-A 90 nt0.98□□□□□ -2.25
PUF4P25339 MLP1YKR095W 5628 nt0.97□□□□□ -2.25
PUF4P25339 PET111YMR257C 2403 nt0.97□□□□□ -2.25
PUF4P25339 SKI7YOR076C 2244 nt0.95□□□□□ -2.26
PUF4P25339 YKL145W-AYKL145W-A 93 nt0.94□□□□□ -2.26
PUF4P25339 IQG1YPL242C 4488 nt0.92□□□□□ -2.26
PUF4P25339 YGR122C-AYGR122C-A 129 nt0.89□□□□□ -2.27
PUF4P25339 YKL096C-BYKL096C-B 150 nt0.88□□□□□ -2.27
PUF4P25339 YBL100W-BYBL100W-B 5313 nt0.87□□□□□ -2.27
PUF4P25339 THO2YNL139C 4794 nt0.87□□□□□ -2.27
PUF4P25339 YPR159C-AYPR159C-A 102 nt0.84□□□□□ -2.27
PUF4P25339 snR67snR67 82 nt0.8□□□□□ -2.28
PUF4P25339 MLP2YIL149C 5040 nt0.73□□□□□ -2.29
PUF4P25339 YER078W-AYER078W-A 165 nt0.73□□□□□ -2.29
PUF4P25339 tT(AGU)BtT(AGU)B 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)CtT(AGU)C 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)DtT(AGU)D 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)HtT(AGU)H 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)I1tT(AGU)I1 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)I2tT(AGU)I2 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)JtT(AGU)J 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)N1tT(AGU)N1 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)N2tT(AGU)N2 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)O1tT(AGU)O1 73 nt0.72□□□□□ -2.29
PUF4P25339 tT(AGU)O2tT(AGU)O2 73 nt0.72□□□□□ -2.29
PUF4P25339 YOR186C-AYOR186C-A 210 nt0.71□□□□□ -2.3
PUF4P25339 snR75snR75 89 nt0.7□□□□□ -2.3
PUF4P25339 YMR272W-AYMR272W-A 114 nt0.68□□□□□ -2.3
PUF4P25339 FMP27YLR454W 7887 nt0.65□□□□□ -2.31
PUF4P25339 UTP10YJL109C 5310 nt0.6□□□□□ -2.31 RIP-Chip
PUF4P25339 YKL106C-AYKL106C-A 120 nt0.6□□□□□ -2.31
PUF4P25339 YML100W-AYML100W-A 174 nt0.59□□□□□ -2.31
PUF4P25339 SOV1YMR066W 2697 nt0.54□□□□□ -2.32
PUF4P25339 ESP1YGR098C 4893 nt0.54□□□□□ -2.32
PUF4P25339 YDL114W-AYDL114W-A 114 nt0.53□□□□□ -2.32
PUF4P25339 tV(UAC)QtV(UAC)Q 76 nt0.53□□□□□ -2.32
PUF4P25339 YOR376W-AYOR376W-A 156 nt0.48□□□□□ -2.33
PUF4P25339 YOL013W-AYOL013W-A 192 nt0.36□□□□□ -2.35
PUF4P25339 YOR316C-AYOR316C-A 210 nt0.36□□□□□ -2.35
PUF4P25339 snR128snR128 126 nt0.32□□□□□ -2.36
PUF4P25339 snR77snR77 88 nt0.31□□□□□ -2.36
PUF4P25339 PAU9YBL108C-A 129 nt0.27□□□□□ -2.37
PUF4P25339 SBH2YER019C-A 267 nt0.26□□□□□ -2.37
Retrieved 100 of 7,029 protein–RNA pairs in 14.4 ms