Protein–RNA interactions for Protein: P22276

RET1, DNA-directed RNA polymerase III subunit RPC2, yeastyeast

Known RBP Predictions only

Length 1,149 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RET1P22276 HKR1YDR420W 5409 nt1.45□□□□□ -2.18
RET1P22276 YDR034C-AYDR034C-A 177 nt1.44□□□□□ -2.18
RET1P22276 YOL164W-AYOL164W-A 183 nt1.44□□□□□ -2.18
RET1P22276 UTP20YBL004W 7482 nt1.43□□□□□ -2.18
RET1P22276 YGR240C-AYGR240C-A 201 nt1.42□□□□□ -2.18
RET1P22276 YLR286W-AYLR286W-A 135 nt1.42□□□□□ -2.18
RET1P22276 YOL014WYOL014W 375 nt1.39□□□□□ -2.19
RET1P22276 BUD3YCL014W 4911 nt1.39□□□□□ -2.19
RET1P22276 NST1YNL091W 3723 nt1.38□□□□□ -2.19
RET1P22276 tD(GUC)QtD(GUC)Q 75 nt1.36□□□□□ -2.19
RET1P22276 DOP1YDR141C 5097 nt1.35□□□□□ -2.19
RET1P22276 YPL060C-AYPL060C-A 3315 nt1.32□□□□□ -2.2
RET1P22276 snR69snR69 101 nt1.32□□□□□ -2.2
RET1P22276 snR47snR47 99 nt1.32□□□□□ -2.2
RET1P22276 EST1YLR233C 2100 nt1.31□□□□□ -2.2
RET1P22276 CSE1YGL238W 2883 nt1.31□□□□□ -2.2
RET1P22276 YLR299C-AYLR299C-A 93 nt1.28□□□□□ -2.2
RET1P22276 ORC3YLL004W 1851 nt1.28□□□□□ -2.2
RET1P22276 YLL006W-AYLL006W-A 177 nt1.27□□□□□ -2.21
RET1P22276 SPT7YBR081C 3999 nt1.27□□□□□ -2.21
RET1P22276 YDL159C-BYDL159C-B 177 nt1.24□□□□□ -2.21
RET1P22276 RDS3YPR094W 324 nt1.24□□□□□ -2.21
RET1P22276 NIP1YMR309C 2439 nt1.21□□□□□ -2.22
RET1P22276 YJL077W-AYJL077W-A 87 nt1.2□□□□□ -2.22
RET1P22276 BUL2YML111W 2763 nt1.18□□□□□ -2.22
RET1P22276 snR53snR53 91 nt1.18□□□□□ -2.22
RET1P22276 YMR160WYMR160W 2451 nt1.16□□□□□ -2.22
RET1P22276 BEM2YER155C 6504 nt1.16□□□□□ -2.22
RET1P22276 snR64snR64 101 nt1.15□□□□□ -2.23
RET1P22276 YKL145W-AYKL145W-A 93 nt1.14□□□□□ -2.23
RET1P22276 RKR1YMR247C 4689 nt1.12□□□□□ -2.23
RET1P22276 YML054C-AYML054C-A 159 nt1.12□□□□□ -2.23
RET1P22276 SCC2YDR180W 4482 nt1.12□□□□□ -2.23
RET1P22276 YPR117WYPR117W 7470 nt1.12□□□□□ -2.23
RET1P22276 VAM6YDL077C 3150 nt1.12□□□□□ -2.23
RET1P22276 YHR180C-BYHR180C-B 105 nt1.09□□□□□ -2.23
RET1P22276 YKL225WYKL225W 348 nt1.07□□□□□ -2.24
RET1P22276 tQ(UUG)QtQ(UUG)Q 76 nt1.06□□□□□ -2.24
RET1P22276 YOR192C-BYOR192C-B 5313 nt1.05□□□□□ -2.24
RET1P22276 YBR109W-AYBR109W-A 225 nt1.05□□□□□ -2.24
RET1P22276 EMT1tM(CAU)D 73 nt1.04□□□□□ -2.24
RET1P22276 EMT5tM(CAU)J1 73 nt1.04□□□□□ -2.24
RET1P22276 EMT3tM(CAU)J2 73 nt1.04□□□□□ -2.24
RET1P22276 EMT4tM(CAU)M 73 nt1.04□□□□□ -2.24
RET1P22276 EMT2tM(CAU)O2 73 nt1.04□□□□□ -2.24
RET1P22276 RPL41AYDL184C 78 nt1.03□□□□□ -2.24
RET1P22276 LTE1YAL024C 4308 nt1.02□□□□□ -2.25
RET1P22276 YBR296C-AYBR296C-A 120 nt1.01□□□□□ -2.25
RET1P22276 YJR029WYJR029W 5268 nt1.01□□□□□ -2.25
RET1P22276 YPR137C-BYPR137C-B 5268 nt1.01□□□□□ -2.25
RET1P22276 snR50snR50 90 nt1□□□□□ -2.25
RET1P22276 YDR371C-AYDR371C-A 105 nt0.98□□□□□ -2.25
RET1P22276 PET111YMR257C 2403 nt0.97□□□□□ -2.25
RET1P22276 YER090C-AYER090C-A 90 nt0.96□□□□□ -2.26
RET1P22276 snR38snR38 95 nt0.96□□□□□ -2.26
RET1P22276 YNL054W-BYNL054W-B 5250 nt0.96□□□□□ -2.26
RET1P22276 IQG1YPL242C 4488 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)BtT(AGU)B 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)CtT(AGU)C 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)DtT(AGU)D 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)HtT(AGU)H 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)I1tT(AGU)I1 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)I2tT(AGU)I2 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)JtT(AGU)J 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)N1tT(AGU)N1 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)N2tT(AGU)N2 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)O1tT(AGU)O1 73 nt0.91□□□□□ -2.26
RET1P22276 tT(AGU)O2tT(AGU)O2 73 nt0.91□□□□□ -2.26
RET1P22276 AI1Q0050 2505 nt0.89□□□□□ -2.27
RET1P22276 MYO1YHR023W 5787 nt0.86□□□□□ -2.27
RET1P22276 YBL100W-BYBL100W-B 5313 nt0.85□□□□□ -2.27
RET1P22276 MLP1YKR095W 5628 nt0.84□□□□□ -2.28
RET1P22276 SKI7YOR076C 2244 nt0.81□□□□□ -2.28
RET1P22276 snR67snR67 82 nt0.81□□□□□ -2.28
RET1P22276 FMP27YLR454W 7887 nt0.8□□□□□ -2.28
RET1P22276 YDL159W-AYDL159W-A 132 nt0.78□□□□□ -2.28
RET1P22276 YPR159C-AYPR159C-A 102 nt0.76□□□□□ -2.29
RET1P22276 THO2YNL139C 4794 nt0.73□□□□□ -2.29
RET1P22276 MLP2YIL149C 5040 nt0.73□□□□□ -2.29
RET1P22276 YGR122C-AYGR122C-A 129 nt0.72□□□□□ -2.29
RET1P22276 YLR149C-AYLR149C-A 87 nt0.72□□□□□ -2.29
RET1P22276 YER078W-AYER078W-A 165 nt0.69□□□□□ -2.3
RET1P22276 YMR272W-AYMR272W-A 114 nt0.68□□□□□ -2.3
RET1P22276 YOR186C-AYOR186C-A 210 nt0.68□□□□□ -2.3
RET1P22276 UTP10YJL109C 5310 nt0.62□□□□□ -2.31
RET1P22276 YKL096C-BYKL096C-B 150 nt0.62□□□□□ -2.31
RET1P22276 YML100W-AYML100W-A 174 nt0.56□□□□□ -2.32
RET1P22276 YKL106C-AYKL106C-A 120 nt0.52□□□□□ -2.33
RET1P22276 ESP1YGR098C 4893 nt0.51□□□□□ -2.33
RET1P22276 SOV1YMR066W 2697 nt0.51□□□□□ -2.33
RET1P22276 YDL114W-AYDL114W-A 114 nt0.38□□□□□ -2.35
RET1P22276 snR75snR75 89 nt0.37□□□□□ -2.35
RET1P22276 YOL013W-AYOL013W-A 192 nt0.36□□□□□ -2.35
RET1P22276 snR128snR128 126 nt0.34□□□□□ -2.36
RET1P22276 YOR376W-AYOR376W-A 156 nt0.32□□□□□ -2.36
RET1P22276 tV(UAC)QtV(UAC)Q 76 nt0.3□□□□□ -2.36
RET1P22276 PAU9YBL108C-A 129 nt0.25□□□□□ -2.37
RET1P22276 YOR316C-AYOR316C-A 210 nt0.24□□□□□ -2.37
RET1P22276 SBH2YER019C-A 267 nt0.17□□□□□ -2.38
RET1P22276 YJL113WYJL113W 4647 nt0.16□□□□□ -2.38
Retrieved 100 of 7,029 protein–RNA pairs in 14.6 ms