Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
Sox3P53784 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.67■■□□□ 1.22
Sox3P53784 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Sox3P53784 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.66■■□□□ 1.22
Sox3P53784 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC22.65■■□□□ 1.22
Sox3P53784 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Sox3P53784 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Sox3P53784 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
Sox3P53784 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
Sox3P53784 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Sox3P53784 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC22.62■■□□□ 1.21
Sox3P53784 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.62■■□□□ 1.21
Sox3P53784 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.61■■□□□ 1.21
Sox3P53784 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Sox3P53784 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC22.61■■□□□ 1.21
Sox3P53784 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22.6■■□□□ 1.21
Sox3P53784 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Sox3P53784 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
Sox3P53784 Gm15039-201ENSMUST00000118914 875 ntBASIC22.59■■□□□ 1.21
Sox3P53784 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Sox3P53784 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.59■■□□□ 1.21
Sox3P53784 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Sox3P53784 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Sox3P53784 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Sox3P53784 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Sox3P53784 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Sox3P53784 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.57■■□□□ 1.2
Sox3P53784 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Sox3P53784 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Sox3P53784 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Sox3P53784 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC22.57■■□□□ 1.2
Sox3P53784 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Sox3P53784 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Sox3P53784 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Sox3P53784 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Sox3P53784 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Sox3P53784 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Sox3P53784 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.55■■□□□ 1.2
Sox3P53784 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
Sox3P53784 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Sox3P53784 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.54■■□□□ 1.2
Sox3P53784 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Sox3P53784 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Sox3P53784 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Sox3P53784 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Sox3P53784 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Sox3P53784 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Sox3P53784 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Sox3P53784 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
Sox3P53784 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Sox3P53784 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Sox3P53784 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Sox3P53784 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Sox3P53784 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Sox3P53784 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.5■■□□□ 1.19
Sox3P53784 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Sox3P53784 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.48■■□□□ 1.19
Sox3P53784 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Sox3P53784 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Sox3P53784 Gm6311-201ENSMUST00000073790 878 ntBASIC22.48■■□□□ 1.19
Sox3P53784 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Sox3P53784 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Sox3P53784 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC22.47■■□□□ 1.19
Sox3P53784 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Sox3P53784 AC153890.1-201ENSMUST00000220021 2469 ntBASIC22.47■■□□□ 1.19
Sox3P53784 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC22.47■■□□□ 1.19
Sox3P53784 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Sox3P53784 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Sox3P53784 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC22.45■■□□□ 1.18
Sox3P53784 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Sox3P53784 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Sox3P53784 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Sox3P53784 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.45■■□□□ 1.18
Sox3P53784 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Sox3P53784 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC22.44■■□□□ 1.18
Sox3P53784 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Sox3P53784 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Sox3P53784 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Sox3P53784 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Sox3P53784 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Sox3P53784 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Sox3P53784 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Sox3P53784 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Sox3P53784 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Sox3P53784 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22.42■■□□□ 1.18
Sox3P53784 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Sox3P53784 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC22.42■■□□□ 1.18
Sox3P53784 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Sox3P53784 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
Sox3P53784 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Sox3P53784 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Sox3P53784 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Sox3P53784 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Sox3P53784 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.41■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms