Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
Col1a1P11087 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Col1a1P11087 Gm30023-201ENSMUST00000197970 889 ntBASIC29.01■■■□□ 2.23
Col1a1P11087 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC29.01■■■□□ 2.23
Col1a1P11087 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
Col1a1P11087 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC29.01■■■□□ 2.23
Col1a1P11087 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
Col1a1P11087 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC29■■■□□ 2.23
Col1a1P11087 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC29■■■□□ 2.23
Col1a1P11087 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Col1a1P11087 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
Col1a1P11087 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Col1a1P11087 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC28.98■■■□□ 2.23
Col1a1P11087 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Col1a1P11087 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC28.97■■■□□ 2.23
Col1a1P11087 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Col1a1P11087 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Col1a1P11087 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Col1a1P11087 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC28.95■■■□□ 2.22
Col1a1P11087 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Col1a1P11087 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC28.93■■■□□ 2.22
Col1a1P11087 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Col1a1P11087 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
Col1a1P11087 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Col1a1P11087 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Col1a1P11087 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.22
Col1a1P11087 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Col1a1P11087 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.88■■■□□ 2.21
Col1a1P11087 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC28.88■■■□□ 2.21
Col1a1P11087 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Col1a1P11087 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Col1a1P11087 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Col1a1P11087 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Col1a1P11087 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC28.85■■■□□ 2.21
Col1a1P11087 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Col1a1P11087 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Col1a1P11087 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Col1a1P11087 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Col1a1P11087 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
Col1a1P11087 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
Col1a1P11087 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC28.85■■■□□ 2.21
Col1a1P11087 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
Col1a1P11087 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Col1a1P11087 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Col1a1P11087 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Col1a1P11087 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Col1a1P11087 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Col1a1P11087 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Col1a1P11087 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
Col1a1P11087 Pcf11-205ENSMUST00000208255 1720 ntBASIC28.8■■■□□ 2.2
Col1a1P11087 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Col1a1P11087 Scarna2-201ENSMUST00000157560 414 ntBASIC28.78■■■□□ 2.2
Col1a1P11087 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Col1a1P11087 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
Col1a1P11087 Gm11687-201ENSMUST00000118911 886 ntBASIC28.77■■■□□ 2.2
Col1a1P11087 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Col1a1P11087 Gm9806-201ENSMUST00000051080 552 ntBASIC28.77■■■□□ 2.2
Col1a1P11087 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Col1a1P11087 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC28.74■■■□□ 2.19
Col1a1P11087 Gm12366-201ENSMUST00000121722 873 ntBASIC28.74■■■□□ 2.19
Col1a1P11087 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC28.74■■■□□ 2.19
Col1a1P11087 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC28.74■■■□□ 2.19
Col1a1P11087 Gm5786-201ENSMUST00000085368 882 ntBASIC28.74■■■□□ 2.19
Col1a1P11087 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
Col1a1P11087 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Col1a1P11087 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Col1a1P11087 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC28.72■■■□□ 2.19
Col1a1P11087 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
Col1a1P11087 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Col1a1P11087 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Col1a1P11087 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC28.72■■■□□ 2.19
Col1a1P11087 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Col1a1P11087 AC154454.1-201ENSMUST00000225253 216 ntBASIC28.72■■■□□ 2.19
Col1a1P11087 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Col1a1P11087 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Col1a1P11087 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Col1a1P11087 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Col1a1P11087 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.19
Col1a1P11087 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC28.7■■■□□ 2.18
Col1a1P11087 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Col1a1P11087 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Col1a1P11087 Gm4799-201ENSMUST00000095396 657 ntBASIC28.69■■■□□ 2.18
Col1a1P11087 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Col1a1P11087 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
Col1a1P11087 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Col1a1P11087 Pkd1-207ENSMUST00000228550 1050 ntBASIC28.68■■■□□ 2.18
Col1a1P11087 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC28.66■■■□□ 2.18
Col1a1P11087 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Col1a1P11087 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Col1a1P11087 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Col1a1P11087 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Col1a1P11087 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC28.65■■■□□ 2.18
Col1a1P11087 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Col1a1P11087 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC28.63■■■□□ 2.17
Col1a1P11087 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
Col1a1P11087 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
Col1a1P11087 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC28.62■■■□□ 2.17
Col1a1P11087 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Col1a1P11087 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Col1a1P11087 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms