Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm25239-201ENSMUST00000174915 86 ntBASIC47.64■■■■■ 5.22
Col1a1P11087 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC44.26■■■■■ 4.68
Col1a1P11087 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC43.54■■■■■ 4.56
Col1a1P11087 Gm24109-201ENSMUST00000175489 103 ntBASIC41.5■■■■■ 4.23
Col1a1P11087 Gm15042-201ENSMUST00000120212 883 ntBASIC41.29■■■■■ 4.2
Col1a1P11087 Gm15045-201ENSMUST00000117359 883 ntBASIC40.34■■■■■ 4.05
Col1a1P11087 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC40.26■■■■■ 4.04
Col1a1P11087 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC40.16■■■■■ 4.02
Col1a1P11087 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC40.13■■■■■ 4.01
Col1a1P11087 Gm23366-201ENSMUST00000175022 89 ntBASIC39.75■■■■□ 3.95
Col1a1P11087 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC39.57■■■■□ 3.93
Col1a1P11087 AC153911.1-202ENSMUST00000218534 1034 ntBASIC38.78■■■■□ 3.8
Col1a1P11087 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
Col1a1P11087 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC38.5■■■■□ 3.75
Col1a1P11087 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC38.44■■■■□ 3.74
Col1a1P11087 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC38.43■■■■□ 3.74
Col1a1P11087 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
Col1a1P11087 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC38.13■■■■□ 3.69
Col1a1P11087 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
Col1a1P11087 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38.05■■■■□ 3.68
Col1a1P11087 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
Col1a1P11087 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
Col1a1P11087 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC37.79■■■■□ 3.64
Col1a1P11087 Gm25238-201ENSMUST00000174914 89 ntBASIC37.7■■■■□ 3.63
Col1a1P11087 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37.47■■■■□ 3.59
Col1a1P11087 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC37.32■■■■□ 3.56
Col1a1P11087 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
Col1a1P11087 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37.1■■■■□ 3.53
Col1a1P11087 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC37.08■■■■□ 3.53
Col1a1P11087 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
Col1a1P11087 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
Col1a1P11087 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
Col1a1P11087 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36.77■■■■□ 3.48
Col1a1P11087 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC36.71■■■■□ 3.47
Col1a1P11087 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.7■■■■□ 3.47
Col1a1P11087 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.57■■■■□ 3.44
Col1a1P11087 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC36.56■■■■□ 3.44
Col1a1P11087 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC36.56■■■■□ 3.44
Col1a1P11087 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
Col1a1P11087 Gm25262-201ENSMUST00000174934 133 ntBASIC36.31■■■■□ 3.4
Col1a1P11087 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
Col1a1P11087 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC36.13■■■■□ 3.37
Col1a1P11087 Gm27325-201ENSMUST00000175467 74 ntBASIC36.1■■■■□ 3.37
Col1a1P11087 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC35.92■■■■□ 3.34
Col1a1P11087 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
Col1a1P11087 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35.81■■■■□ 3.32
Col1a1P11087 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC35.76■■■■□ 3.32
Col1a1P11087 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC35.73■■■■□ 3.31
Col1a1P11087 Rab21-202ENSMUST00000218831 843 ntBASIC35.73■■■■□ 3.31
Col1a1P11087 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.3
Col1a1P11087 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC35.66■■■■□ 3.3
Col1a1P11087 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.65■■■■□ 3.3
Col1a1P11087 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC35.62■■■■□ 3.29
Col1a1P11087 Gm26115-201ENSMUST00000175605 87 ntBASIC35.58■■■■□ 3.29
Col1a1P11087 Psd-208ENSMUST00000224556 2034 ntBASIC35.54■■■■□ 3.28
Col1a1P11087 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
Col1a1P11087 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Col1a1P11087 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC35.39■■■■□ 3.26
Col1a1P11087 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
Col1a1P11087 Gm8109-201ENSMUST00000194076 746 ntBASIC35.34■■■■□ 3.25
Col1a1P11087 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
Col1a1P11087 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
Col1a1P11087 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC35.23■■■■□ 3.23
Col1a1P11087 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC35.21■■■■□ 3.23
Col1a1P11087 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC35.14■■■■□ 3.22
Col1a1P11087 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35.04■■■■□ 3.2
Col1a1P11087 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
Col1a1P11087 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC34.98■■■■□ 3.19
Col1a1P11087 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
Col1a1P11087 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
Col1a1P11087 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC34.88■■■■□ 3.17
Col1a1P11087 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC34.88■■■■□ 3.17
Col1a1P11087 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
Col1a1P11087 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.69■■■■□ 3.14
Col1a1P11087 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Col1a1P11087 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC34.65■■■■□ 3.14
Col1a1P11087 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC34.63■■■■□ 3.13
Col1a1P11087 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34.61■■■■□ 3.13
Col1a1P11087 Gm17082-201ENSMUST00000166043 1091 ntBASIC34.58■■■■□ 3.13
Col1a1P11087 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
Col1a1P11087 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
Col1a1P11087 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34.46■■■■□ 3.11
Col1a1P11087 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC34.46■■■■□ 3.11
Col1a1P11087 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
Col1a1P11087 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC34.42■■■■□ 3.1
Col1a1P11087 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
Col1a1P11087 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC34.33■■■■□ 3.09
Col1a1P11087 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC34.26■■■■□ 3.08
Col1a1P11087 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Col1a1P11087 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC34.22■■■■□ 3.07
Col1a1P11087 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.22■■■■□ 3.07
Col1a1P11087 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
Col1a1P11087 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC34.21■■■■□ 3.07
Col1a1P11087 Gm24804-201ENSMUST00000174982 85 ntBASIC34.19■■■■□ 3.06
Col1a1P11087 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
Col1a1P11087 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC34.15■■■■□ 3.06
Col1a1P11087 Gm27322-201ENSMUST00000184007 104 ntBASIC34.09■■■■□ 3.05
Col1a1P11087 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC34.07■■■■□ 3.04
Col1a1P11087 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC34.06■■■■□ 3.04
Col1a1P11087 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms