Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col4a1P02463 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Col4a1P02463 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Col4a1P02463 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col4a1P02463 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Col4a1P02463 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col4a1P02463 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col4a1P02463 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Col4a1P02463 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Col4a1P02463 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC30.52■■■□□ 2.48
Col4a1P02463 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Col4a1P02463 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC30.51■■■□□ 2.48
Col4a1P02463 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
Col4a1P02463 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Col4a1P02463 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col4a1P02463 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col4a1P02463 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col4a1P02463 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col4a1P02463 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Col4a1P02463 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
Col4a1P02463 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
Col4a1P02463 AC131739.1-201ENSMUST00000221692 1245 ntBASIC30.47■■■□□ 2.47
Col4a1P02463 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Col4a1P02463 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col4a1P02463 Mir6538-201ENSMUST00000183713 110 ntBASIC30.46■■■□□ 2.47
Col4a1P02463 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Col4a1P02463 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Col4a1P02463 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC30.45■■■□□ 2.46
Col4a1P02463 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
Col4a1P02463 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col4a1P02463 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col4a1P02463 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col4a1P02463 Pcf11-205ENSMUST00000208255 1720 ntBASIC30.44■■■□□ 2.46
Col4a1P02463 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col4a1P02463 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Col4a1P02463 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Col4a1P02463 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Col4a1P02463 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Col4a1P02463 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
Col4a1P02463 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Col4a1P02463 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Col4a1P02463 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC30.4■■■□□ 2.46
Col4a1P02463 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col4a1P02463 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
Col4a1P02463 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
Col4a1P02463 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
Col4a1P02463 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
Col4a1P02463 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.38■■■□□ 2.45
Col4a1P02463 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC30.38■■■□□ 2.45
Col4a1P02463 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC30.38■■■□□ 2.45
Col4a1P02463 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
Col4a1P02463 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC30.36■■■□□ 2.45
Col4a1P02463 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Col4a1P02463 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC30.35■■■□□ 2.45
Col4a1P02463 AC167019.3-201ENSMUST00000228225 1266 ntBASIC30.35■■■□□ 2.45
Col4a1P02463 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Col4a1P02463 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Col4a1P02463 Particl-201ENSMUST00000205370 1560 ntBASIC30.32■■■□□ 2.44
Col4a1P02463 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.31■■■□□ 2.44
Col4a1P02463 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
Col4a1P02463 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
Col4a1P02463 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Col4a1P02463 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.3■■■□□ 2.44
Col4a1P02463 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC30.28■■■□□ 2.44
Col4a1P02463 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col4a1P02463 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Col4a1P02463 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Col4a1P02463 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
Col4a1P02463 Cap2-205ENSMUST00000225824 1634 ntBASIC30.24■■■□□ 2.43
Col4a1P02463 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC30.23■■■□□ 2.43
Col4a1P02463 Gm6311-201ENSMUST00000073790 878 ntBASIC30.23■■■□□ 2.43
Col4a1P02463 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Col4a1P02463 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC30.23■■■□□ 2.43
Col4a1P02463 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Col4a1P02463 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
Col4a1P02463 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Col4a1P02463 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Col4a1P02463 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Col4a1P02463 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Col4a1P02463 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Col4a1P02463 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.15■■■□□ 2.42
Col4a1P02463 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Col4a1P02463 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Col4a1P02463 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Col4a1P02463 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Col4a1P02463 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC30.12■■■□□ 2.41
Col4a1P02463 Zxda-201ENSMUST00000117281 2621 ntBASIC30.11■■■□□ 2.41
Col4a1P02463 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
Col4a1P02463 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col4a1P02463 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Col4a1P02463 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
Col4a1P02463 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col4a1P02463 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col4a1P02463 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col4a1P02463 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
Col4a1P02463 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col4a1P02463 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC30.09■■■□□ 2.41
Col4a1P02463 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Col4a1P02463 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Col4a1P02463 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 142.5 ms