Protein–RNA interactions for Protein: O35137

Alx4, Homeobox protein aristaless-like 4, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Alx4O35137 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Alx4O35137 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Alx4O35137 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Alx4O35137 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Alx4O35137 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Alx4O35137 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.31■■□□□ 1
Alx4O35137 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Alx4O35137 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.31■■□□□ 1
Alx4O35137 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.31■■□□□ 1
Alx4O35137 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Alx4O35137 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.3■■□□□ 1
Alx4O35137 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.3■■□□□ 1
Alx4O35137 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Alx4O35137 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Alx4O35137 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Alx4O35137 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Alx4O35137 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Alx4O35137 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Alx4O35137 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.27■■□□□ 1
Alx4O35137 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.27■■□□□ 1
Alx4O35137 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Alx4O35137 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Alx4O35137 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Alx4O35137 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Alx4O35137 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Alx4O35137 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Alx4O35137 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Alx4O35137 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Alx4O35137 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Alx4O35137 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Alx4O35137 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Alx4O35137 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.24■□□□□ 0.99
Alx4O35137 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Alx4O35137 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Alx4O35137 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.24■□□□□ 0.99
Alx4O35137 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Alx4O35137 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Alx4O35137 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Alx4O35137 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Alx4O35137 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Alx4O35137 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
Alx4O35137 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Alx4O35137 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Alx4O35137 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Alx4O35137 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Alx4O35137 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Alx4O35137 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.19■□□□□ 0.98
Alx4O35137 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Alx4O35137 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Alx4O35137 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Alx4O35137 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Alx4O35137 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Alx4O35137 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Alx4O35137 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Alx4O35137 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Alx4O35137 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Alx4O35137 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Alx4O35137 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.16■□□□□ 0.98
Alx4O35137 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Alx4O35137 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Alx4O35137 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Alx4O35137 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Alx4O35137 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Alx4O35137 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Alx4O35137 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Alx4O35137 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Alx4O35137 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Alx4O35137 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Alx4O35137 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Alx4O35137 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Alx4O35137 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Alx4O35137 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Alx4O35137 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Alx4O35137 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.11■□□□□ 0.97
Alx4O35137 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Alx4O35137 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Alx4O35137 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Alx4O35137 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Alx4O35137 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Alx4O35137 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Alx4O35137 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Alx4O35137 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Alx4O35137 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Alx4O35137 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Alx4O35137 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx4O35137 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Alx4O35137 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx4O35137 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx4O35137 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx4O35137 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Alx4O35137 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Alx4O35137 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Alx4O35137 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms