Protein–RNA interactions for Protein: P40070

LSM4, U6 snRNA-associated Sm-like protein LSm4, yeastyeast

Known RBP Predictions only

Length 187 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM4P40070 YDL073WYDL073W 2955 nt0.6□□□□□ -2.31
LSM4P40070 YIL115W-AYIL115W-A 372 nt0.59□□□□□ -2.31
LSM4P40070 RPS25BYLR333C 327 nt0.59□□□□□ -2.31
LSM4P40070 YPL225WYPL225W 441 nt0.59□□□□□ -2.31
LSM4P40070 YPR159C-AYPR159C-A 102 nt0.59□□□□□ -2.31
LSM4P40070 SPO21YOL091W 1830 nt0.59□□□□□ -2.32
LSM4P40070 HTL1YCR020W-B 237 nt0.58□□□□□ -2.32
LSM4P40070 YDL196WYDL196W 330 nt0.58□□□□□ -2.32
LSM4P40070 YDR183C-AYDR183C-A 258 nt0.58□□□□□ -2.32
LSM4P40070 ATP6Q0085 780 nt0.58□□□□□ -2.32
LSM4P40070 CMC4YMR194C-B 222 nt0.58□□□□□ -2.32
LSM4P40070 DBP6YNR038W 1890 nt0.57□□□□□ -2.32
LSM4P40070 NHP2YDL208W 471 nt0.57□□□□□ -2.32
LSM4P40070 YDR344CYDR344C 444 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)BtT(AGU)B 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)CtT(AGU)C 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)DtT(AGU)D 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)HtT(AGU)H 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)I1tT(AGU)I1 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)I2tT(AGU)I2 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)JtT(AGU)J 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)N1tT(AGU)N1 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)N2tT(AGU)N2 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)O1tT(AGU)O1 73 nt0.57□□□□□ -2.32
LSM4P40070 tT(AGU)O2tT(AGU)O2 73 nt0.57□□□□□ -2.32
LSM4P40070 snR36snR36 182 nt0.57□□□□□ -2.32
LSM4P40070 GEA2YEL022W 4380 nt0.57□□□□□ -2.32
LSM4P40070 BIR1YJR089W 2865 nt0.57□□□□□ -2.32
LSM4P40070 ISD11YER048W-A 285 nt0.56□□□□□ -2.32
LSM4P40070 OLI1Q0130 231 nt0.56□□□□□ -2.32
LSM4P40070 YOR011W-AYOR011W-A 207 nt0.56□□□□□ -2.32
LSM4P40070 RKR1YMR247C 4689 nt0.56□□□□□ -2.32
LSM4P40070 MCM10YIL150C 1716 nt0.55□□□□□ -2.32
LSM4P40070 COG8YML071C 1824 nt0.55□□□□□ -2.32
LSM4P40070 YFL032WYFL032W 321 nt0.55□□□□□ -2.32
LSM4P40070 YFL063WYFL063W 456 nt0.55□□□□□ -2.32
LSM4P40070 ECM12YHR021W-A 456 nt0.55□□□□□ -2.32
LSM4P40070 YKL118WYKL118W 312 nt0.55□□□□□ -2.32
LSM4P40070 PRP16YKR086W 3216 nt0.54□□□□□ -2.32
LSM4P40070 UTP10YJL109C 5310 nt0.54□□□□□ -2.32
LSM4P40070 NOP9YJL010C 2001 nt0.54□□□□□ -2.32
LSM4P40070 BFR2YDR299W 1605 nt0.53□□□□□ -2.32
LSM4P40070 snR60snR60 104 nt0.53□□□□□ -2.32
LSM4P40070 YDR413CYDR413C 576 nt0.53□□□□□ -2.32
LSM4P40070 YER097WYER097W 330 nt0.53□□□□□ -2.32
LSM4P40070 ALG13YGL047W 609 nt0.53□□□□□ -2.32
LSM4P40070 YIL032CYIL032C 357 nt0.53□□□□□ -2.32
LSM4P40070 SGF11YPL047W 300 nt0.53□□□□□ -2.32
LSM4P40070 VIK1YPL253C 1944 nt0.52□□□□□ -2.33
LSM4P40070 YGL149WYGL149W 306 nt0.52□□□□□ -2.33
LSM4P40070 YMR193C-AYMR193C-A 387 nt0.52□□□□□ -2.33
LSM4P40070 YNL211CYNL211C 261 nt0.52□□□□□ -2.33
LSM4P40070 YOR282WYOR282W 321 nt0.52□□□□□ -2.33
LSM4P40070 YPL044CYPL044C 549 nt0.52□□□□□ -2.33
LSM4P40070 ASE1YOR058C 2658 nt0.52□□□□□ -2.33
LSM4P40070 PMP1YCR024C-A 123 nt0.51□□□□□ -2.33
LSM4P40070 YDR524W-CYDR524W-C 90 nt0.51□□□□□ -2.33
LSM4P40070 RPS27BYHR021C 249 nt0.51□□□□□ -2.33
LSM4P40070 YKL136WYKL136W 399 nt0.51□□□□□ -2.33
LSM4P40070 YML002WYML002W 2214 nt0.51□□□□□ -2.33
LSM4P40070 UBP3YER151C 2739 nt0.51□□□□□ -2.33
LSM4P40070 PAA1YDR071C 576 nt0.5□□□□□ -2.33
LSM4P40070 YFR012W-AYFR012W-A 87 nt0.5□□□□□ -2.33
LSM4P40070 RPL39YJL189W 156 nt0.5□□□□□ -2.33
LSM4P40070 IES4YOR189W 351 nt0.5□□□□□ -2.33
LSM4P40070 STE5YDR103W 2754 nt0.5□□□□□ -2.33
LSM4P40070 AI1Q0050 2505 nt0.49□□□□□ -2.33
LSM4P40070 CSE2YNR010W 450 nt0.48□□□□□ -2.33
LSM4P40070 BUL2YML111W 2763 nt0.48□□□□□ -2.33
LSM4P40070 YDR354C-AYDR354C-A 144 nt0.47□□□□□ -2.33
LSM4P40070 YER078W-AYER078W-A 165 nt0.47□□□□□ -2.33
LSM4P40070 RPL26BYGR034W 384 nt0.47□□□□□ -2.33
LSM4P40070 YDL185C-AYDL185C-A 228 nt0.46□□□□□ -2.34
LSM4P40070 YJL026C-AYJL026C-A 222 nt0.46□□□□□ -2.34
LSM4P40070 YAL067W-AYAL067W-A 228 nt0.46□□□□□ -2.34
LSM4P40070 YNL028WYNL028W 318 nt0.46□□□□□ -2.34
LSM4P40070 YOR015WYOR015W 360 nt0.45□□□□□ -2.34
LSM4P40070 CHS6YJL099W 2241 nt0.45□□□□□ -2.34
LSM4P40070 PRP39YML046W 1890 nt0.44□□□□□ -2.34
LSM4P40070 NPR2YEL062W 1848 nt0.44□□□□□ -2.34
LSM4P40070 YHR063W-AYHR063W-A 336 nt0.44□□□□□ -2.34
LSM4P40070 LTE1YAL024C 4308 nt0.44□□□□□ -2.34
LSM4P40070 ULP2YIL031W 3105 nt0.43□□□□□ -2.34
LSM4P40070 RAD61YDR014W 1944 nt0.43□□□□□ -2.34
LSM4P40070 Q0142Q0142 177 nt0.43□□□□□ -2.34
LSM4P40070 YJL197C-AYJL197C-A 282 nt0.43□□□□□ -2.34
LSM4P40070 YLR120W-AYLR120W-A 102 nt0.43□□□□□ -2.34
LSM4P40070 YPR160W-AYPR160W-A 81 nt0.43□□□□□ -2.34
LSM4P40070 SEC8YPR055W 3198 nt0.43□□□□□ -2.34
LSM4P40070 snR190snR190 190 nt0.42□□□□□ -2.34
LSM4P40070 FYV10YIL097W 1551 nt0.41□□□□□ -2.34
LSM4P40070 YCR018C-AYCR018C-A 255 nt0.41□□□□□ -2.34
LSM4P40070 YEL020C-BYEL020C-B 198 nt0.41□□□□□ -2.34
LSM4P40070 YMR307C-AYMR307C-A 195 nt0.41□□□□□ -2.34
LSM4P40070 YNL277W-AYNL277W-A 189 nt0.41□□□□□ -2.34
LSM4P40070 HAL9YOL089C 3093 nt0.41□□□□□ -2.34
LSM4P40070 PRP5YBR237W 2550 nt0.4□□□□□ -2.35
LSM4P40070 YGR069WYGR069W 336 nt0.4□□□□□ -2.35
LSM4P40070 YLL019W-AYLL019W-A 93 nt0.4□□□□□ -2.35
LSM4P40070 YLR399W-AYLR399W-A 105 nt0.4□□□□□ -2.35
Retrieved 100 of 7,029 protein–RNA pairs in 12.8 ms