Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim54Q9ERP3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Trim54Q9ERP3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Trim54Q9ERP3 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.56■■□□□ 1.84
Trim54Q9ERP3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Gm7432-201ENSMUST00000210343 879 ntBASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.52■■□□□ 1.84
Trim54Q9ERP3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trim54Q9ERP3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Trim54Q9ERP3 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Trim54Q9ERP3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trim54Q9ERP3 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC26.49■■□□□ 1.83
Trim54Q9ERP3 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim54Q9ERP3 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC26.48■■□□□ 1.83
Trim54Q9ERP3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Trim54Q9ERP3 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Trim54Q9ERP3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC26.44■■□□□ 1.82
Trim54Q9ERP3 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Trim54Q9ERP3 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
Trim54Q9ERP3 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.42■■□□□ 1.82
Trim54Q9ERP3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trim54Q9ERP3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Trim54Q9ERP3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Trim54Q9ERP3 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Trim54Q9ERP3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Trim54Q9ERP3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.4■■□□□ 1.82
Trim54Q9ERP3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
Trim54Q9ERP3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.38■■□□□ 1.81
Trim54Q9ERP3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim54Q9ERP3 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Trim54Q9ERP3 Gm11599-201ENSMUST00000118720 878 ntBASIC26.35■■□□□ 1.81
Trim54Q9ERP3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trim54Q9ERP3 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim54Q9ERP3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Trim54Q9ERP3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim54Q9ERP3 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
Trim54Q9ERP3 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.31■■□□□ 1.8
Trim54Q9ERP3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim54Q9ERP3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim54Q9ERP3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Trim54Q9ERP3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim54Q9ERP3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim54Q9ERP3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim54Q9ERP3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim54Q9ERP3 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.26■■□□□ 1.79
Trim54Q9ERP3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim54Q9ERP3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.25■■□□□ 1.79
Trim54Q9ERP3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trim54Q9ERP3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim54Q9ERP3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.24■■□□□ 1.79
Trim54Q9ERP3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Trim54Q9ERP3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim54Q9ERP3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim54Q9ERP3 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim54Q9ERP3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Trim54Q9ERP3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.2■■□□□ 1.79
Trim54Q9ERP3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Trim54Q9ERP3 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Trim54Q9ERP3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Trim54Q9ERP3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Trim54Q9ERP3 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Gm30023-201ENSMUST00000197970 889 ntBASIC26.17■■□□□ 1.78
Trim54Q9ERP3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trim54Q9ERP3 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
Trim54Q9ERP3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.13■■□□□ 1.77
Trim54Q9ERP3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms