Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm25239-201ENSMUST00000174915 86 ntBASIC42.08■■■■■ 4.33
Trim54Q9ERP3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.96■■■■□ 3.83
Trim54Q9ERP3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.39■■■■□ 3.74
Trim54Q9ERP3 Gm15042-201ENSMUST00000120212 883 ntBASIC36.67■■■■□ 3.46
Trim54Q9ERP3 Gm24109-201ENSMUST00000175489 103 ntBASIC36.49■■■■□ 3.43
Trim54Q9ERP3 Gm15045-201ENSMUST00000117359 883 ntBASIC35.85■■■■□ 3.33
Trim54Q9ERP3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
Trim54Q9ERP3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
Trim54Q9ERP3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.51■■■■□ 3.28
Trim54Q9ERP3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
Trim54Q9ERP3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
Trim54Q9ERP3 Gm23366-201ENSMUST00000175022 89 ntBASIC35.11■■■■□ 3.21
Trim54Q9ERP3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
Trim54Q9ERP3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.56■■■■□ 3.12
Trim54Q9ERP3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Trim54Q9ERP3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.09■■■■□ 3.05
Trim54Q9ERP3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
Trim54Q9ERP3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.88■■■■□ 3.01
Trim54Q9ERP3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.85■■■■□ 3.01
Trim54Q9ERP3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.78■■■■□ 3
Trim54Q9ERP3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.76■■■□□ 2.99
Trim54Q9ERP3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.7■■■□□ 2.99
Trim54Q9ERP3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Trim54Q9ERP3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Trim54Q9ERP3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Trim54Q9ERP3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Trim54Q9ERP3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.33■■■□□ 2.93
Trim54Q9ERP3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
Trim54Q9ERP3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Trim54Q9ERP3 Gm25238-201ENSMUST00000174914 89 ntBASIC33.26■■■□□ 2.91
Trim54Q9ERP3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Trim54Q9ERP3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.2■■■□□ 2.91
Trim54Q9ERP3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
Trim54Q9ERP3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.06■■■□□ 2.88
Trim54Q9ERP3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
Trim54Q9ERP3 Psd-208ENSMUST00000224556 2034 ntBASIC32.78■■■□□ 2.84
Trim54Q9ERP3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
Trim54Q9ERP3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.54■■■□□ 2.8
Trim54Q9ERP3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.42■■■□□ 2.78
Trim54Q9ERP3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Trim54Q9ERP3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.36■■■□□ 2.77
Trim54Q9ERP3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
Trim54Q9ERP3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
Trim54Q9ERP3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.14■■■□□ 2.74
Trim54Q9ERP3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
Trim54Q9ERP3 Gm27325-201ENSMUST00000175467 74 ntBASIC32.13■■■□□ 2.73
Trim54Q9ERP3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Trim54Q9ERP3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.99■■■□□ 2.71
Trim54Q9ERP3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Trim54Q9ERP3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Trim54Q9ERP3 Gm25262-201ENSMUST00000174934 133 ntBASIC31.87■■■□□ 2.69
Trim54Q9ERP3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.79■■■□□ 2.68
Trim54Q9ERP3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Trim54Q9ERP3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.64■■■□□ 2.66
Trim54Q9ERP3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Trim54Q9ERP3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.63■■■□□ 2.65
Trim54Q9ERP3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Trim54Q9ERP3 Rab21-202ENSMUST00000218831 843 ntBASIC31.58■■■□□ 2.65
Trim54Q9ERP3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Trim54Q9ERP3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.5■■■□□ 2.63
Trim54Q9ERP3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Trim54Q9ERP3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Trim54Q9ERP3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Trim54Q9ERP3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.31■■■□□ 2.6
Trim54Q9ERP3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.29■■■□□ 2.6
Trim54Q9ERP3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.6
Trim54Q9ERP3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.26■■■□□ 2.59
Trim54Q9ERP3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
Trim54Q9ERP3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Trim54Q9ERP3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.2■■■□□ 2.59
Trim54Q9ERP3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Trim54Q9ERP3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.17■■■□□ 2.58
Trim54Q9ERP3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Trim54Q9ERP3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Trim54Q9ERP3 Gm26115-201ENSMUST00000175605 87 ntBASIC31.1■■■□□ 2.57
Trim54Q9ERP3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Trim54Q9ERP3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Trim54Q9ERP3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim54Q9ERP3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
Trim54Q9ERP3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Trim54Q9ERP3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Trim54Q9ERP3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Trim54Q9ERP3 Gm8109-201ENSMUST00000194076 746 ntBASIC30.95■■■□□ 2.55
Trim54Q9ERP3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Trim54Q9ERP3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Trim54Q9ERP3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Trim54Q9ERP3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Trim54Q9ERP3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
Trim54Q9ERP3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Trim54Q9ERP3 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.82■■■□□ 2.53
Trim54Q9ERP3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.8■■■□□ 2.52
Trim54Q9ERP3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.79■■■□□ 2.52
Trim54Q9ERP3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
Trim54Q9ERP3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.78■■■□□ 2.52
Trim54Q9ERP3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Trim54Q9ERP3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Trim54Q9ERP3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.62■■■□□ 2.49
Trim54Q9ERP3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.62■■■□□ 2.49
Trim54Q9ERP3 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.61■■■□□ 2.49
Trim54Q9ERP3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms